Pairwise Alignments

Query, 443 a.a., type VI secretion system baseplate subunit TssK from Escherichia coli ECRC101

Subject, 446 a.a., hypothetical protein from Agrobacterium fabrum C58

 Score =  288 bits (737), Expect = 2e-82
 Identities = 161/445 (36%), Positives = 242/445 (54%), Gaps = 12/445 (2%)

Query: 6   NKVMWQEGMLMRPHHFQQQQRYNDYLDNQRFRAMNDLSWGFTELTLNNELLAQGKIMIDS 65
           N+V W EGM +R  HFQQ  R+ + L     R ++   WG  E+ ++   L+ G+  + +
Sbjct: 5   NRVAWSEGMFLRVQHFQQSDRWTERLVRNTTRNLSPYPWGIAEIGVDRSALSIGQFALSN 64

Query: 66  ASGTLPDGTVFSIPDQDALPDPLHPQNFPDERSRN--IYLALPVASDVRNEISDGRRIG- 122
             G LPDGT F  P+   LP PL      DE  +N  IYLALP     + ++S   R   
Sbjct: 65  LRGVLPDGTPFEAPEDSDLPPPLDL----DESVKNAIIYLALPARQPGKADMSTSGRNDT 120

Query: 123 ---RYRLNYADVRDLHSEEGDARTLTLGQLTPRIMSGAEDMSAYITLPLCRISDRHADGS 179
              R+  +  +V D + E      + +G+L+ + +   +D+S Y  + L R+ +  +D +
Sbjct: 121 NNVRFTASSYEVTDTNIETDFVAPIDVGRLSLKFLKTGDDLSGYDLIGLARVIEVRSDRA 180

Query: 180 LTLDDDFIPSCQNIQVSKKLRVYLKEVQGAIGGRASDLANRIGSPAQSGIADVAEFMMLQ 239
           + LD DFIP   +   + +L   L E+ G +  RA  +A RIG P   G A+V ++ +LQ
Sbjct: 181 VILDPDFIPPSLSCAAAPRLNELLTELLGIVRHRAQAIAERIGDPTIRGTAEVGDYFLLQ 240

Query: 240 LLNRNQTRFTHR-ARRSQLHPEDFYLDLAELLGELMTFTEPSRLPCPLDVYDHHDLTKTF 298
           +LNR      HR A  ++ HP  FY D  +L GEL TFT   +       Y H DL  TF
Sbjct: 241 ILNRADPLLAHRGANATRFHPIRFYEDCIQLAGELATFTTDRKRATDFPPYRHEDLKATF 300

Query: 299 KTLLPEVKRALHTVLSPRAVNLPL-HLRDGIWQADVHDSELLQSATFVLAVAANMPVDQI 357
             +  +++ +L  VL   AV + L   R G+    +HD  LL+ A FVLAV A+M  + I
Sbjct: 301 GAVFDDLRTSLSAVLEQAAVAIELVERRHGVRVGTIHDRTLLRDAGFVLAVRADMAAEDI 360

Query: 358 QRQFIQQSKISSPEKIRNMVSVQIPGIPLRALMVAPRQLPYHSGFSYFELDKSGQAWTEM 417
           +R+   Q K+   E+I  +V+V +PGIP+R+L V PRQLPY SG  YFE+D     W ++
Sbjct: 361 RRRLPAQIKVGPVERISELVNVALPGIPVRSLPVLPRQLPYRSGTVYFEIDTQSPLWKQL 420

Query: 418 AAAGAVALHVSGSFPDLNMQLWAIR 442
             +GA+ALH++G FP L M++WA+R
Sbjct: 421 DTSGAIALHLAGEFPGLEMEMWALR 445