Pairwise Alignments

Query, 571 a.a., hydrogenase 4 catalytic subunit HyfG from Escherichia coli ECRC100

Subject, 600 a.a., NADH:ubiquinone oxidoreductase, fused CD subunit from Escherichia coli BL21

 Score =  160 bits (406), Expect = 1e-43
 Identities = 147/539 (27%), Positives = 240/539 (44%), Gaps = 77/539 (14%)

Query: 63  LFGNDERTLNGH--------YAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAA 114
           L G DER L  H        ++V+Y L      +  ++  AL + D    P+ T   P A
Sbjct: 77  LHGMDER-LRTHREGLPAADFSVFYHLISIDRNRDIMLKVALAENDLH-VPTFTKLFPNA 134

Query: 115 VWGEREIRDMYGLIPVGLPDQRRLVLPDDWPEDMHPLRKD----AMDYR----------- 159
            W ERE  D++G+   G P+ RR+++P  W    HPLRKD    A ++            
Sbjct: 135 NWYERETWDLFGITFDGHPNLRRIMMPQTWKG--HPLRKDYPARATEFSPFELTKAKQDL 192

Query: 160 ------LRPEPT-----TDSETYPFINEGNSGARVIPVGPLHITSDEPGHFRLFVDGEQI 208
                  +PE       T++E + F+N          +GP H ++       L +DGE+I
Sbjct: 193 EMEALTFKPEEWGMKRGTENEDFMFLN----------LGPNHPSAHGAFRIVLQLDGEEI 242

Query: 209 VDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQ 268
           VD    + Y HRG EK+ E +  ++ + + +DR+  + G  + + Y  +VE   GI VP 
Sbjct: 243 VDCVPDIGYHHRGAEKMGERQSWHSYIPY-TDRIEYLGGCVNEMPYVLAVEKLAGITVPD 301

Query: 269 RAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLTGSRKTYG 328
           R + IR +L E+ R++SHLL +      VG  T     F  R+K   + E +TG R    
Sbjct: 302 RVNVIRVMLSELFRINSHLLYISTFIQDVGAMTPVFFAFTDRQKIYDLVEAITGFRMHPA 361

Query: 329 LNLIGGVRRDILKEQRLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQIARD 388
              IGGV  D+ +       + +  M   ++   +  L    ++ R+QG+     + A +
Sbjct: 362 WFRIGGVAHDLPRGWDRLLREFLDWMPKRLASYEKAALQNTILKGRSQGVAAYGAKEALE 421

Query: 389 YSPVGPLIRGSGFARDLRFDHPYADYGNIPKTLFTFTG-GDVFSRVMVRVKETFDSLAML 447
           +   G  +R +G   D+R   PY+ Y N    +    G  D ++RVM++V+E   SL +L
Sbjct: 422 WGTTGAGLRATGIDFDVRKARPYSGYENFDFEIPVGGGVSDCYTRVMLKVEELRQSLRIL 481

Query: 448 EFALDNMPDTP----------------------LLTEGFSYK-----PHAFALGFVEAPR 480
           E  L+NMP+ P                      L+T           P   +   +EA +
Sbjct: 482 EQCLNNMPEGPFKADHPLTTPPPKERTLQHIETLITHFLQVSWGPVMPANESFQMIEATK 541

Query: 481 GEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 539
           G + ++     +   +R R R  +YA+   +   +RG+ VSD  + +GS+D   S  DR
Sbjct: 542 GINSYYLTSDGSTMSYRTRIRTPSYAHLQQIPAAIRGSLVSDLIVYLGSIDFVMSDVDR 600