Pairwise Alignments

Query, 1122 a.a., exodeoxyribonuclease V subunit gamma from Escherichia coli ECRC100

Subject, 1149 a.a., Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) from Pseudomonas fluorescens GW456-L13

 Score =  660 bits (1702), Expect = 0.0
 Identities = 442/1134 (38%), Positives = 598/1134 (52%), Gaps = 111/1134 (9%)

Query: 4    VYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQKF--------G 55
            V H NRLD L +L+   + R  L  P E E+ LVQS G+AQWL++ L++          G
Sbjct: 13   VVHGNRLDELRSLVVSWMRRYPLA-PLENEIALVQSNGIAQWLKLALAEDSEEDDMGGCG 71

Query: 56   IAANIDFPLPASFIWDMFVRVL--PEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRH 113
            IAA ID  LP SF+W ++  VL   EIP +S  +K  ++W+LM LLPQL+ +  F  L+ 
Sbjct: 72   IAAAIDVQLPGSFMWQLYRMVLGRDEIPVKSLLDKAPLTWRLMRLLPQLINQPHFEPLQR 131

Query: 114  YLTDDSDKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHL--------VEGLGEAQAWQ 165
            +LT D+D RK +QL+ + ADLFDQY VYR DWL  W  G           + L  A  WQ
Sbjct: 132  FLTHDTDLRKRYQLAERLADLFDQYQVYRADWLEDWAEGRHQTRNARGEAKPLTPANCWQ 191

Query: 166  APLWKALVEYTHELGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQ 225
            A LW+AL+    E G  +  RA ++QRF+E +      P GLPSRV + GIS+LP   L+
Sbjct: 192  AELWRALLLDVGEEGMAQ-SRAGVHQRFVERINHLEAAPKGLPSRVIVFGISSLPAQALE 250

Query: 226  ALQALGKHIEIHLLFTNPCRYYWGDI-KDPAYLAKLLTRQRRHSFEDHELPLFRDSENAG 284
            AL  L +  ++ L   NPCR++W DI  D   L     RQ R S     +P+  D +   
Sbjct: 251  ALAGLARFSQVLLCVHNPCRHHWADIVADKDLLRHQYKRQARKS----GMPVVIDPQTLH 306

Query: 285  QLFNSDGEQDVGNPLLASWGKLGRDYIYLLSDLESSQE---------LDAFVDVTPDNLL 335
            Q           +PLLA+WGK GRDYI LL   +             +D F D  P N+L
Sbjct: 307  QH---------AHPLLAAWGKQGRDYINLLDSYDDPNSYRSAFRDGRIDLFSDGQPLNVL 357

Query: 336  HNIQSDILELENRAVAGVNIEEFSRSDNKRPLDPL--DSSITFHVCHSPQREVEVLHDRL 393
            + +Q DILEL             + +  + P   L  D SI FH+ HS QREVE+LHD+L
Sbjct: 358  NQLQDDILELR----------PLNETRERWPAIDLQQDESIRFHIAHSAQREVEILHDQL 407

Query: 394  LAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPAD--RYLPYAISDRRARQSHPVL 451
            LA     PTL PRDIIVMV DIDSY+P I+AVFG       R++P+ ++D+  R   P+L
Sbjct: 408  LARFSAAPTLRPRDIIVMVPDIDSYAPHIRAVFGQLDRQDPRFIPFTLADQGQRGRDPLL 467

Query: 452  EAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNV 511
             A   LL LPDSRF   ++L LLDVP L ARF + E  L  L +W+  +GIRWG++ +  
Sbjct: 468  IAVEHLLKLPDSRFPVSEILDLLDVPALRARFGVEERDLPTLHRWIEGAGIRWGMNAEQR 527

Query: 512  RELELP-ATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQ 570
              L LP    Q++WRFGL RMLLGYA+ SA   ++ + PYDE  GL A L+G L +LL  
Sbjct: 528  AGLGLPNELEQNSWRFGLRRMLLGYAVGSADA-YEGIEPYDEIGGLDAALIGPLVALLDA 586

Query: 571  LNIWRRGLAQERPLEEWLPVCRDMLNALFLPDAETE----AAMTLIEQQWQAIIAEGLGA 626
            L +    L+Q     +W    + ++   FL   E +    A +  + + W     E +G 
Sbjct: 587  LEVAHHELSQPASPGQWGLRLQALVQLFFLAGNEHDDYLLAQLEELRETWLET-CESVGL 645

Query: 627  QYGDAVPLSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYP 686
            Q  D +PL+++R+     LDQ R+SQRFLAG VN CTLMPMR+IPFK+VCLLGMNDG YP
Sbjct: 646  Q--DELPLTVVREAWLAGLDQGRLSQRFLAGAVNFCTLMPMRAIPFKLVCLLGMNDGDYP 703

Query: 687  RQLAPLGFDLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSV 746
            R   PL FDLM    + GDRSRR+DDRYL LEAL+SA+ +LYIS++GRSI+DNSER  SV
Sbjct: 704  RAQPPLDFDLMGSDYRPGDRSRREDDRYLLLEALLSARDQLYISWVGRSIRDNSERPASV 763

Query: 747  LVQELIDYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGERQ-SYARE 805
            L+ +L D     H   G   L  DE    +   +T  H   PF  + +  G+   SYA E
Sbjct: 764  LIGQLRD-----HLASGWRMLQSDED---LLEAMTREHPLQPFSARYFHDGDESFSYATE 815

Query: 806  WLPAASQAGKAHSEFVQPLPFTLPETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIP 865
            W     QA + H       P    E + L  LQ F  +PVR FF  RL+V F   +  + 
Sbjct: 816  W-QVLHQAAEQHPSAEVLGPHIQDEPLSLGQLQDFLRNPVRHFFSQRLKVFFEAAEVPLA 874

Query: 866  DTEPFILEGLSRYQINQQLLNALVEQ-----DDAERLFRRFRAAGDLPYGAFGEIFWETQ 920
            D EPF+L+ L RY ++ +LL A +          E   +R + +G LP   FGE      
Sbjct: 875  DEEPFVLDALQRYSLSDRLLEAALADPGNTGQALEDQAKRLQNSGLLPMAGFGECLQREL 934

Query: 921  CQEMQQLADR-----VIACRQPGQSMEIDLACNGVQITGW---LPQVQPDGLLRWR--PS 970
             + +  L  R      +       ++ + L   G+ I GW   L Q    GLL     P+
Sbjct: 935  IEPLPDLLQRHQQLLALWPTPLSSALPVSLELQGLHIEGWLGGLHQRADGGLLSVTTIPN 994

Query: 971  LLSVAQGMQL------WLEHLVYCASGGNGESRLFLRKDGEWRFPPLAAEQALHYLSQLI 1024
             +   +  +       W+ HL+ CAS G   +   +  D      PL    A   L  L+
Sbjct: 995  SIGSIKSRKWHRLTRPWVNHLMACAS-GMALTTALVASDDSLLLGPLDQSTARKILGDLL 1053

Query: 1025 EGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYEGN 1078
              ++ GM  PL +  ++  AWL      Q D +        KA     +AYEG+
Sbjct: 1054 MAWQSGMRQPLPIAVKTAFAWL-----GQTDPV--------KAEAAARKAYEGD 1094