Pairwise Alignments

Query, 243 a.a., 16S rRNA (uracil(1498)-N(3))-methyltransferase from Escherichia coli ECRC100

Subject, 241 a.a., Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  157 bits (397), Expect = 2e-43
 Identities = 92/239 (38%), Positives = 131/239 (54%), Gaps = 10/239 (4%)

Query: 3   IPRIYHPEPLTSHSHIALCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEITSASKKSV 62
           +PR + P PL     ++L   AA H+ +VLR+ PGQ + LF+G    +DA IT   +  V
Sbjct: 1   MPRFHCPAPLLEGQPLSLPAAAARHV-QVLRLQPGQTITLFNGQGGEWDATITRMGRSDV 59

Query: 63  EVKVLEGQIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDSE 122
           EV +   +  +RE    +HL   M   ++M++ ++K+ ELGV+ + PL +    ++L  E
Sbjct: 60  EVVLGAHRATEREPARAVHLALGMPANDRMDWLVEKAAELGVASLQPLHTSHSVLRLAGE 119

Query: 123 RLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAW---CAEQDEGLKLNLH-----PR 174
           R  KK   WQ +A+AACEQCG NRVP + P  D  AW       D GL+  L        
Sbjct: 120 RATKKQAHWQSVAVAACEQCGGNRVPTVHPVSDFAAWLKTLPPADAGLRCLLSLADGTQP 179

Query: 175 ASNSINTLPLPVERVRLLIGPEGGLSADEIAMTARYQFTDILLGPRVLRTETTALTAIT 233
            + ++  +P P   V  L GPEGGL+A E A+     F  + LGPRVLR ET AL A+T
Sbjct: 180 LARALAGVPAPAP-VWFLSGPEGGLNASEDALARAAGFLPVTLGPRVLRAETAALAALT 237