Pairwise Alignments

Query, 282 a.a., autoinducer 2 ABC transporter permease LsrC from Escherichia coli ECOR38

Subject, 328 a.a., fused L-arabinose transporter subunits of ABC superfamily: membrane components (RefSeq) from Escherichia coli BW25113

 Score =  145 bits (365), Expect = 1e-39
 Identities = 86/240 (35%), Positives = 130/240 (54%)

Query: 5   VSVGSITGMCAVLLGMLLNAGYSLPVACVATLLLGLLAGFFNGVLVAWLKIPAIVATLGT 64
           +SV S+     V   +++N   SL +   A LLLG+L G  NG ++A LKI A++ TL T
Sbjct: 79  LSVASVIACAGVTTAVVINLTESLWIGVAAGLLLGVLCGLVNGFVIAKLKINALITTLAT 138

Query: 65  LGLYRGIMLLWTGGKWIEGLPAELKQLSAPLLFGVSAIGWLTIILVAFMAWLLAKTAFGR 124
           + + RG+  + + GK +         L     FG+ A  WLT+  +     LL KT FGR
Sbjct: 139 MQIVRGLAYIISDGKAVGIEDESFFALGYANWFGLPAPIWLTVACLIIFGLLLNKTTFGR 198

Query: 125 SFYVTGDNLQGARQLGVRTEAIRIVAFSLNGCMAALAGIVFASQIGFIPNQTGTGLEMKA 184
           +    G N + AR  GV     +I+ F L+G ++A+AGI+ AS++      T  G E+  
Sbjct: 199 NTLAIGGNEEAARLAGVPVVRTKIIIFVLSGLVSAIAGIILASRMTSGQPMTSIGYELIV 258

Query: 185 IAACVLGGISLLGGSGAIIGAVLGAWFLTQIDSVLVLLRIPAWWNDFIAGMVLLAVLVFD 244
           I+ACVLGG+SL GG G I   V G   L  +++ + LL I  +    + G++LLA ++FD
Sbjct: 259 ISACVLGGVSLKGGIGKISYVVAGILILGTVENAMNLLNISPFAQYVVRGLILLAAVIFD 318