Pairwise Alignments

Query, 282 a.a., autoinducer 2 ABC transporter permease LsrC from Escherichia coli ECOR38

Subject, 325 a.a., ribose ABC transporter permease from Agrobacterium fabrum C58

 Score =  153 bits (387), Expect = 4e-42
 Identities = 85/241 (35%), Positives = 143/241 (59%), Gaps = 4/241 (1%)

Query: 5   VSVGSITGMCAVL-LGMLLNAGYSLPVACVATLLLGLLAGFFNGVLVAWLKIPAIVATLG 63
           +SVG++  +   L  G+++N G S  +A  A L +GL  G FNG LVAW ++PAI+ TL 
Sbjct: 81  LSVGAVMALVGTLSAGLMVNTGLSPAIALPAGLFIGLGIGIFNGALVAWGRMPAIIVTLA 140

Query: 64  TLGLYRGIMLLWTGGKWIEGLPAELKQLSAPLLFGVSAIGWLTIILVAFMAW-LLAKTAF 122
           T+G+ RG+ L+++GG  + G+P+ +       + G+  +  + ++++  +AW LL +TAF
Sbjct: 141 TMGMARGLGLIYSGGYPVSGIPSWISWFGVGRV-GIVPVPVIIMVVIYAVAWVLLQRTAF 199

Query: 123 GRSFYVTGDNLQGARQLGVRTEAIRIVAFSLNGCMAALAGIVFASQIGFIPNQTGTGLEM 182
           GR  Y  G N   AR  GV+T  +++  + ++G  AA A ++   ++       G G E+
Sbjct: 200 GRHVYALGGNELAARLSGVKTRRVKLAVYGISGVTAAFAALILTGRLMSGQPNAGVGFEL 259

Query: 183 KAIAACVLGGISLLGGSGAIIGAVLGAWFLTQIDSVLVLLRIPAWWNDFI-AGMVLLAVL 241
            AIAA VLGG ++ GG G I+G ++GA  L  +++ L L+ I  +  D I  G++LLA+ 
Sbjct: 260 DAIAAVVLGGTAIAGGRGLILGTLIGAVLLGILNNGLNLMGINPYLQDVIKGGIILLAIY 319

Query: 242 V 242
           +
Sbjct: 320 I 320