Pairwise Alignments

Query, 282 a.a., autoinducer 2 ABC transporter permease LsrC from Escherichia coli ECOR38

Subject, 333 a.a., ABC transporter permease from Agrobacterium fabrum C58

 Score =  152 bits (383), Expect = 1e-41
 Identities = 90/255 (35%), Positives = 139/255 (54%), Gaps = 3/255 (1%)

Query: 9   SITGMCAVLLGMLLNAGYSLPVACVATLLLGLLAGFFNGVLVAWLKIPAIVATLGTLGLY 68
           + TGM AV +      G  LP+  V  + +G   G  NG+LV WL IP IV TLGTL +Y
Sbjct: 71  AFTGM-AVAMTNAAFPGVPLPLLIVMAVGIGAFLGSLNGILVWWLGIPPIVVTLGTLTIY 129

Query: 69  RGIMLLWTGGKWIEGLPAELKQLSAP--LLFGVSAIGWLTIILVAFMAWLLAKTAFGRSF 126
           RG+  + +GG W+         L+ P  ++ G+  + W+ I+++A    +L +T+FGRS 
Sbjct: 130 RGMAFVLSGGGWVNAHQFSPTFLNVPRTMILGMPVLSWVAILIIAGAWLVLTRTSFGRSA 189

Query: 127 YVTGDNLQGARQLGVRTEAIRIVAFSLNGCMAALAGIVFASQIGFIPNQTGTGLEMKAIA 186
           Y +G N   A   G+     R  AF L+G +A LA  ++ S+          G E+ ++A
Sbjct: 190 YASGGNPGAAVYAGIDVGRTRFFAFVLSGALAGLASYLWVSRYAVAYVDIAAGFELDSVA 249

Query: 187 ACVLGGISLLGGSGAIIGAVLGAWFLTQIDSVLVLLRIPAWWNDFIAGMVLLAVLVFDGR 246
           A V+GGIS+ GG G++ GAVLGA FL  I + L ++ I  +    I+G+V++  +VF+ R
Sbjct: 250 ANVIGGISIAGGIGSVAGAVLGALFLGVIKNALPVIGISPFAQMAISGVVIVLAVVFNAR 309

Query: 247 LRCALERNLRRQKYA 261
                 R + R + A
Sbjct: 310 AEARKGRIILRDRAA 324