Pairwise Alignments

Query, 385 a.a., prophage integrase IntS from Escherichia coli ECOR38

Subject, 394 a.a., integrase from Pseudomonas simiae WCS417

 Score =  241 bits (614), Expect = 3e-68
 Identities = 145/384 (37%), Positives = 206/384 (53%), Gaps = 8/384 (2%)

Query: 2   LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61
           LT    + AKP+E  Y + D  GL LYV  SG K W  R+   GK+  +++G YP   L+
Sbjct: 3   LTDTAAKQAKPRENGYTIPDSLGLSLYVAPSGVKSWHFRFTWLGKQVRISIGTYPETGLK 62

Query: 62  EARDKAWTARKDISVGIDP------VKAKKASSNNNSFSAIYKEWYEHKKQVWSVGYATE 115
           EAR +   AR+DI+ G+DP       KA   ++   +F  +Y EW   +K   S G    
Sbjct: 63  EARARRDEAREDIANGVDPRDSRREKKAGMIAAGGQTFRRVYDEWLAFRKGSISPGTYRV 122

Query: 116 LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG 175
           ++     D+LP +G  +I  I+   ++ +IRR E RG++  A K R+R  +VF YAI TG
Sbjct: 123 ISNAMALDVLPTLGDRQIDAIKRADVIALIRRVEKRGSVATAVKVRQRMSQVFSYAIATG 182

Query: 176 RAKYNPAPDL-ADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALR 234
             + NP  ++ A   K  + K  PFLP  ++P    A+   +       A  ++ YTA R
Sbjct: 183 VIEANPTAEMHAVTEKMGQHKPHPFLPFSEMPRIMAAIRDCASGQQLKAALMLMIYTASR 242

Query: 235 TKELRSMQWKSVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFA 294
             E+R  +W  +D +  I T  A+ MK R+ H VP+S Q + +L ++  IT     +VF 
Sbjct: 243 PGEVRHAEWSEIDLDAAIWTTPAAKMKMRRDHAVPLSTQAIAILESMLPITGD-KRYVFI 301

Query: 295 GRNDKKKPICDNAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANGG 354
            RN    PI  N    V+   G  G++S HGFRH FST MN   +  D IE QLAHA+  
Sbjct: 302 NRNSTTAPIGTNYANNVMDSCGLTGIQSPHGFRHLFSTEMNGRGYNRDWIERQLAHADSS 361

Query: 355 SVRGIYNHAQYLDKRREMMQWWAD 378
            +R +YNHA YLD+RR MMQ WAD
Sbjct: 362 FIRDVYNHATYLDQRRGMMQEWAD 385