Pairwise Alignments

Query, 373 a.a., hydrogenase formation protein HypD from Escherichia coli ECOR38

Subject, 386 a.a., [NiFe] hydrogenase metallocenter assembly protein HypD from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  339 bits (869), Expect = 9e-98
 Identities = 169/373 (45%), Positives = 230/373 (61%), Gaps = 12/373 (3%)

Query: 1   MRFVDEYRAPEQVMQLIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPEN 60
           M+++DE+R  E   Q+   +   A       +R    ME CGGHTHAI ++G+ +LLP N
Sbjct: 1   MKYIDEFRDGELAKQIGARIAAEAH-----PDRTYSFMEFCGGHTHAISRYGVMELLPPN 55

Query: 61  VEFIHGPGCPVCVLPMGRIDTCVEIASHPEVIFCTFGDAMRVPGKQG-SLLQAKARGADV 119
           V+ +HGPGCPVCVLP+GRID  + +A     I CT+GD MRVP  +  SL++AKARG D+
Sbjct: 56  VKMVHGPGCPVCVLPIGRIDQAIGLALAQGAIVCTYGDTMRVPASESLSLIRAKARGGDI 115

Query: 120 RIVYSPMDALKLAQENPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLI 179
           R+VYS  DAL LA++NP R+VVFF +GFETT P TA+T+Q A+   + NF   C H+   
Sbjct: 116 RMVYSAADALALARQNPQREVVFFAIGFETTTPPTALTIQLAQREGLTNFSVLCCHVLTP 175

Query: 180 PTLRSLLEQPDNG------IDAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLL 233
             +  +LE P+        ID F+ P HVS+VIG   Y   A ++ +P+V+AGFEPLD++
Sbjct: 176 SAITHILESPEVREYGTVPIDGFVGPAHVSIVIGAGPYEHFAEEYRKPVVIAGFEPLDVM 235

Query: 234 QGVVMLVEQKIAAHSKVENQYRRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGV 293
           Q ++MLV Q     + VENQ++R V   GNL AQ  +++VF +    EWRGLG +  S +
Sbjct: 236 QAILMLVRQVNEGRAHVENQFKRAVTSEGNLKAQALVSEVFELRPSFEWRGLGEVPYSAL 295

Query: 294 HLTPDYQRFDAEAHFRPAPQQVCDDPRARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALM 353
            +   Y  FDAE  F    + V D+    CG +L G  KP  C +FG  C P+   G+ M
Sbjct: 296 KIREAYAEFDAERRFALTYRPVADNKACECGAILRGVKKPTDCKIFGTVCTPENPVGSCM 355

Query: 354 VSSEGACAAWYQY 366
           VSSEGACAA Y Y
Sbjct: 356 VSSEGACAAHYAY 368