Pairwise Alignments

Query, 349 a.a., tRNA pseudouridine(13) synthase TruD from Escherichia coli ECOR38

Subject, 349 a.a., tRNA pseudouridine 13 synthase (EC 4.2.1.-) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  628 bits (1620), Expect = 0.0
 Identities = 311/349 (89%), Positives = 329/349 (94%)

Query: 1   MIEFDNLTYLHGKPQGTGLLKANPEDFVVVEDLGFEPDGEGEHILVRILKNGCNTRFVAD 60
           M EFDNLT+LHGKPQG+GLLKANPEDFVVVEDLGF PDGEGEHIL+RILKNGCNTRFVAD
Sbjct: 1   MTEFDNLTWLHGKPQGSGLLKANPEDFVVVEDLGFTPDGEGEHILLRILKNGCNTRFVAD 60

Query: 61  ALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEIPDLSAFQLEGCQVLEYARHKRK 120
           ALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKE+PD SAFQLEGC+VLEYARHKRK
Sbjct: 61  ALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDFSAFQLEGCKVLEYARHKRK 120

Query: 121 LRLGALKGNAFTLVLREVSNRDDVEQRLIDICVKGVPNYFGAQRFGIGGSNLQGALRWAQ 180
           LRLGALKGNAFTLVLRE+S+R DVE RL  I   GVPNYFGAQRFGIGGSNLQGALRWAQ
Sbjct: 121 LRLGALKGNAFTLVLREISDRRDVETRLQAIRDGGVPNYFGAQRFGIGGSNLQGALRWAQ 180

Query: 181 TNTPVRDRNKRSFWLSAARSALFNQIVAERLKKADVNQVVDGDALQLAGRGSWFVATTEE 240
           +N PVRDRNKRSFWLSAARSALFNQIV +RLKK D NQVVDGDALQLAGRGSWFVAT+EE
Sbjct: 181 SNAPVRDRNKRSFWLSAARSALFNQIVHQRLKKPDFNQVVDGDALQLAGRGSWFVATSEE 240

Query: 241 LAELQRRVNDKELMITAALPGSGEWGTQREALAFEQAAVAAETELQALLVREKVEAARRA 300
           L ELQRRV++KELMITA+LPGSGEWGTQR ALAFEQ A+A ET LQ+LL+REKVEA+RRA
Sbjct: 241 LPELQRRVDEKELMITASLPGSGEWGTQRAALAFEQDAIAQETVLQSLLLREKVEASRRA 300

Query: 301 MLLYPQQLSWNWWDDVTVEIRFWLPAGSFATSVVRELINTTGDYAHIAE 349
           MLLYPQQLSWNWWDDVTVE+RFWLPAGSFATSVVRELINT GDYAHIAE
Sbjct: 301 MLLYPQQLSWNWWDDVTVELRFWLPAGSFATSVVRELINTMGDYAHIAE 349