Pairwise Alignments

Query, 499 a.a., D-xylose ABC transporter ATP-binding protein from Escherichia coli ECOR38

Subject, 501 a.a., Ribose import ATP-binding protein RbsA from Escherichia coli HS(pFamp)R (ATCC 700891)

 Score =  398 bits (1023), Expect = e-115
 Identities = 219/497 (44%), Positives = 317/497 (63%), Gaps = 7/497 (1%)

Query: 3   DVILDVSHIAKTFGHVQALKNITLSLRKGRVHTLLGENGAGKSTLMKILAGVYPPTQGTI 62
           + +L +  I K F  V+AL    L++  GRV  L+GENGAGKST+MK+L G+Y    GT+
Sbjct: 2   EALLQLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYARDAGTL 61

Query: 63  TLRGETITINNPQHSRQLGIAIIFQELSLSNNMTVAENIYANNE-PRRFGIINDKKMLAD 121
              G+  T   P+ S++ GI II QEL+L   +T+AENI+   E   RFG I+ K M A+
Sbjct: 62  LWLGKETTFTGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGKIDWKTMYAE 121

Query: 122 CQNLLAELGIPLDPLEMVGNMSMAHRQLVEIAKALSYAADVVIMDEPTSSLSDNEAEILF 181
              LLA+L +     ++VG++S+  +Q+VEIAK LS+ + V+IMDEPT +L+D E E LF
Sbjct: 122 ADKLLAKLNLRFKSDKLVGDLSIGDQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLF 181

Query: 182 NIIEKLKQRGCAVIYISHRMDEIMRISDDISVIRDGEYIATHEKKNSDIQHLIAQMVGRE 241
            +I +LK +G  ++YISHRM EI  I DD++V RDG++IA  E  +     LI  MVGR+
Sbjct: 182 RVIRELKSQGRGIVYISHRMKEIFEICDDVTVFRDGQFIAEREVASLTEDSLIEMMVGRK 241

Query: 242 MKNIWPARLGEKPDENVPAKLEVKNLSHPSLFKEVSFAVRPGEVLGFFGLVGAGRSDVMK 301
           +++ +P  L + P +    +L+V NL  P +  +VSF +R GE+LG  GL+GAGR+++MK
Sbjct: 242 LEDQYP-HLDKAPGD---IRLKVDNLCGPGV-NDVSFTLRKGEILGVSGLMGAGRTELMK 296

Query: 302 ALFG-LVSYHGTVLIDGKEVRIANPKQAIDHGIAFVTENRKEEGLVLMHDVNMNTHHVAF 360
            L+G L    G V +DG EV   +P+  + +GI +++E+RK +GLVL   V  N    A 
Sbjct: 297 VLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTAL 356

Query: 361 QYNASRIGLINHRQEEAKTLQSIARMNTKVSSVHQAVGALSGGNQQKIVLSKWLEKTPRI 420
           +Y +   G + H  E+      I   N K  S+ QA+G LSGGNQQK+ +++ L   P++
Sbjct: 357 RYFSRAGGSLKHADEQQAVSDFIRLFNVKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKV 416

Query: 421 LLLDEPTRGVDVGAKFEIYNVIRQLAAAGTAIILVSSELPEVMALSDRLVVMRNKTIADI 480
           L+LDEPTRGVDVGAK EIY +I Q  A G +IILVSSE+PEV+ +SDR++VM    ++  
Sbjct: 417 LILDEPTRGVDVGAKKEIYQLINQFKADGLSIILVSSEMPEVLGMSDRIIVMHEGHLSGE 476

Query: 481 YSCENLTQTQVMTAATG 497
           ++ E  TQ  +M AA G
Sbjct: 477 FTREQATQEVLMAAAVG 493



 Score = 92.8 bits (229), Expect = 2e-23
 Identities = 59/229 (25%), Positives = 115/229 (50%), Gaps = 11/229 (4%)

Query: 21  LKNITLSLRKGRVHTLLGENGAGKSTLMKILAGVYPPTQGTITLRGETITINNPQHSRQL 80
           + +++ +LRKG +  + G  GAG++ LMK+L G  P T G +TL G  +   +PQ     
Sbjct: 268 VNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLAN 327

Query: 81  GIAIIFQE---------LSLSNNMTVAENIYANNEPRRFGIINDKKMLADCQNLLAELGI 131
           GI  I ++         +S+  NM++    Y +         ++++ ++D   L      
Sbjct: 328 GIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNVKTP 387

Query: 132 PLDPLEMVGNMSMAHRQLVEIAKALSYAADVVIMDEPTSSLSDNEAEILFNIIEKLKQRG 191
            ++  + +G +S  ++Q V IA+ L     V+I+DEPT  +     + ++ +I + K  G
Sbjct: 388 SME--QAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKADG 445

Query: 192 CAVIYISHRMDEIMRISDDISVIRDGEYIATHEKKNSDIQHLIAQMVGR 240
            ++I +S  M E++ +SD I V+ +G       ++ +  + L+A  VG+
Sbjct: 446 LSIILVSSEMPEVLGMSDRIIVMHEGHLSGEFTREQATQEVLMAAAVGK 494