Pairwise Alignments

Query, 296 a.a., sugar ABC transporter from Escherichia coli ECOR38

Subject, 296 a.a., D-ribose transporter subunit (NCBI) from Escherichia coli BW25113

 Score =  143 bits (360), Expect = 5e-39
 Identities = 94/290 (32%), Positives = 157/290 (54%), Gaps = 6/290 (2%)

Query: 1   MKNIKLLGSAMLVSLALFSQSSLAKEYKIGASLLTQQHPFYIDLANAMKEEAKKDNVNLS 60
           MK +  L SA+ +S A  S +++AK+  I   + T  +PF++ L +  ++EA K   NL 
Sbjct: 3   MKKLATLVSAVALS-ATVSANAMAKD-TIALVVSTLNNPFFVSLKDGAQKEADKLGYNLV 60

Query: 61  VSIANQDLNKQLSDVEDFITKKVDAIIISPVDSKGVQAAIIKADKAGIPVITVDVAAEGV 120
           V  +  +  K+L++V+D   +    ++I+P DS  V  A+  A++A IPVIT+D  A   
Sbjct: 61  VLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKG 120

Query: 121 PVVSHVATDNYAGGVEAGKLMGKLL-NGKGTVAIISYPALQSVVARVDGFKKGLSETPDI 179
            VVSH+A+DN  GG  AG  + K    G   + +       +   R +GF++ ++     
Sbjct: 121 EVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVA-AHKF 179

Query: 180 KIVAEQPG-ITRAEALTTAQNIMQANANLNGLFGFGDDAALAAVIAAKSAHNDNIKIIGF 238
            ++A QP    R + L   QN++ A+ ++  +F   D+ AL A+ A ++A   ++ ++GF
Sbjct: 180 NVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGF 239

Query: 239 DGMKEARDAVDSEKTFAAVIRQYPDQMGAKAIDAAVDHLNGKPVEKMIPV 288
           DG  +   AV+  K  AA I Q PDQ+GAK ++ A   L G+ V+   PV
Sbjct: 240 DGTPDGEKAVNDGK-LAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPV 288