Pairwise Alignments

Query, 180 a.a., Uncharacterized protein YrdD from Escherichia coli ECOR38

Subject, 907 a.a., DNA topoisomerase 1 from Xanthobacter sp. DMC5

 Score = 53.9 bits (128), Expect = 8e-12
 Identities = 24/43 (55%), Positives = 29/43 (67%), Gaps = 3/43 (6%)

Query: 62  QVCPACGAN-LVLRQGRFGMFIGCSNYPECEHTELI--DKPDE 101
           ++CP CG   L L+ G+FG FIGCSNYPEC HT  +  D P E
Sbjct: 615 RLCPTCGTGRLSLKMGKFGAFIGCSNYPECRHTRPLTGDNPQE 657



 Score = 53.9 bits (128), Expect = 8e-12
 Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 5/71 (7%)

Query: 15  CPKCGA-ELVIRSGKHGPFLGCSQYPACDYVRPL--KSSADGHIVKVLEGQVCPACGANL 71
           CP CG   L ++ GK G F+GCS YP C + RPL   +  +G   +VL   + P  G  +
Sbjct: 617 CPTCGTGRLSLKMGKFGAFIGCSNYPECRHTRPLTGDNPQEGDGTRVL--GLDPDSGEEV 674

Query: 72  VLRQGRFGMFI 82
            +R GRFG ++
Sbjct: 675 TIRSGRFGTYL 685



 Score = 37.0 bits (84), Expect = 1e-06
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 4/44 (9%)

Query: 106 CPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAGECPE 149
           CP C TG L  +  ++G  F  C  YPEC+   + +P+ G+ P+
Sbjct: 617 CPTCGTGRLSLKMGKFG-AFIGCSNYPECR---HTRPLTGDNPQ 656