Pairwise Alignments
Query, 911 a.a., ribosome-associated ATPase/putative transporter RbbA from Escherichia coli ECOR38
Subject, 578 a.a., LPS export ABC transporter ATP-binding protein from Escherichia coli ECRC62
Score = 224 bits (570), Expect = 2e-62
Identities = 118/286 (41%), Positives = 176/286 (61%), Gaps = 7/286 (2%)
Query: 234 ELRQQTQSATLEEAFINLLPQA-QRQAHQAVVIPPYQPENAEIAIEARDLTMRFGSFVAV 292
E+ + E+AFI+LL A ++ ++ + E IEA++LT +FG F A
Sbjct: 286 EININETTPRFEDAFIDLLGGAGTSESPLGAILHTVEGTPGETVIEAKELTKKFGDFAAT 345
Query: 293 DHVNFRIPRGEIFGFLGSNGCGKSTTMKMLTGLLPASEGEAWLFGQPVDPKDIDTRRRVG 352
DHVNF + RGEIFG LG NG GKSTT KM+ GLL + G+A + G + R+ +G
Sbjct: 346 DHVNFAVKRGEIFGLLGPNGAGKSTTFKMMCGLLVPTSGQALVLGMDLKESSGKARQHLG 405
Query: 353 YMSQAFSLYNELTVRQNLELHARLFHIPEAEIPARVAEMSERFKLNDVEDVLPESLPLGI 412
YM+Q FSLY LTV QNL + ++ + +++ MSE F L + + LPLG
Sbjct: 406 YMAQKFSLYGNLTVEQNLRFFSGVYGLRGRAQNEKISRMSEAFGLKSIASHATDELPLGF 465
Query: 413 RQRLSLAVAVIHRPEMLILDEPTSGVDPVARDMFWQLMVDLSRQDKVTIFISTHFMNEAE 472
+QRL+LA +++H P++L LDEPTSGVDP+ R FW L ++ + VT+ ++THFM+EAE
Sbjct: 466 KQRLALACSLMHEPDILFLDEPTSGVDPLTRREFW-LHINSMVEKGVTVMVTTHFMDEAE 524
Query: 473 RCDRISLMHAGKVLASGTPQELV-----EKRGAASLEEAFIAYLQE 513
CDRI L++ GK++ASGTP +L +++ ++E+AFI + +
Sbjct: 525 YCDRIGLVYRGKLIASGTPDDLKAQSANDEQPDPTMEQAFIQLIHD 570
Score = 143 bits (361), Expect = 3e-38
Identities = 82/203 (40%), Positives = 121/203 (59%), Gaps = 6/203 (2%)
Query: 35 IPARCMVGLIGPDGVGKSSLLSLISGARVIEQGNVIVLGGDMRDPKHRRDVCPRIAWMPQ 94
I A + GL+GPDG GK++L+ +++G + GN V+G D K+ + + +MPQ
Sbjct: 30 IHAGYVTGLVGPDGAGKTTLMRMLAGLLKPDSGNATVIGFD--PIKNDGALHAVLGYMPQ 87
Query: 95 GLGKNLYHTLSVYENVDFFARLFGHDKAEREVRINELLTSTGLAPFRDRPAGKLSGGMKQ 154
G LY L+V EN++ +A L R+ LL T L PF R AGKLSGGMKQ
Sbjct: 88 KFG--LYEDLTVMENLNLYADLRSVTGEARKQTFARLLEFTSLGPFTGRLAGKLSGGMKQ 145
Query: 155 KLGLCCALIHDPELLILDEPTTGVDPLSRAQFWDLIDSIRQRQSNMSVLVATAYMEEAER 214
KLGL C L+ +P++L+LDEP GVDP+SR + W ++ + M +L +T+Y++EAE+
Sbjct: 146 KLGLACTLVGEPKVLLLDEPGVGVDPISRRELWQMVHEL--AGEGMLILWSTSYLDEAEQ 203
Query: 215 FDWLVAMNAGEVLATGSAEELRQ 237
++ MN GE+L G + L Q
Sbjct: 204 CRDVLLMNEGELLYQGEPKALTQ 226
Score = 137 bits (345), Expect = 2e-36
Identities = 78/254 (30%), Positives = 147/254 (57%), Gaps = 11/254 (4%)
Query: 4 LELVPVPPVAQLAGVSQHYGKTVALNNITLDIPARCMVGLIGPDGVGKSSLLSLISGARV 63
+E P V + +++ +G A +++ + + GL+GP+G GKS+ ++ G V
Sbjct: 321 VEGTPGETVIEAKELTKKFGDFAATDHVNFAVKRGEIFGLLGPNGAGKSTTFKMMCGLLV 380
Query: 64 IEQGNVIVLGGDMRDPKHRRDVCPRIAWMPQGLGKNLYHTLSVYENVDFFARLFGHDKAE 123
G +VLG D+++ + + +M Q +LY L+V +N+ FF+ ++G
Sbjct: 381 PTSGQALVLGMDLKESSGKAR--QHLGYMAQKF--SLYGNLTVEQNLRFFSGVYGLRGRA 436
Query: 124 REVRINELLTSTGLAPFRDRPAGKLSGGMKQKLGLCCALIHDPELLILDEPTTGVDPLSR 183
+ +I+ + + GL +L G KQ+L L C+L+H+P++L LDEPT+GVDPL+R
Sbjct: 437 QNEKISRMSEAFGLKSIASHATDELPLGFKQRLALACSLMHEPDILFLDEPTSGVDPLTR 496
Query: 184 AQFWDLIDSIRQRQSNMSVLVATAYMEEAERFDWLVAMNAGEVLATGSAEELRQQTQS-- 241
+FW I+S+ ++ ++V+V T +M+EAE D + + G+++A+G+ ++L+ Q+ +
Sbjct: 497 REFWLHINSMVEK--GVTVMVTTHFMDEAEYCDRIGLVYRGKLIASGTPDDLKAQSANDE 554
Query: 242 ---ATLEEAFINLL 252
T+E+AFI L+
Sbjct: 555 QPDPTMEQAFIQLI 568
Score = 124 bits (312), Expect = 1e-32
Identities = 73/212 (34%), Positives = 115/212 (54%), Gaps = 1/212 (0%)
Query: 291 AVDHVNFRIPRGEIFGFLGSNGCGKSTTMKMLTGLLPASEGEAWLFGQPVDPKDIDTRRR 350
AV ++ I G + G +G +G GK+T M+ML GLL G A + G D
Sbjct: 22 AVAPLDCTIHAGYVTGLVGPDGAGKTTLMRMLAGLLKPDSGNATVIGFDPIKNDGALHAV 81
Query: 351 VGYMSQAFSLYNELTVRQNLELHARLFHIPEAEIPARVAEMSERFKLNDVEDVLPESLPL 410
+GYM Q F LY +LTV +NL L+A L + A + E L L L
Sbjct: 82 LGYMPQKFGLYEDLTVMENLNLYADLRSVTGEARKQTFARLLEFTSLGPFTGRLAGKLSG 141
Query: 411 GIRQRLSLAVAVIHRPEMLILDEPTSGVDPVARDMFWQLMVDLSRQDKVTIFISTHFMNE 470
G++Q+L LA ++ P++L+LDEP GVDP++R WQ++ +L+ + + ++ ST +++E
Sbjct: 142 GMKQKLGLACTLVGEPKVLLLDEPGVGVDPISRRELWQMVHELAGEGMLILW-STSYLDE 200
Query: 471 AERCDRISLMHAGKVLASGTPQELVEKRGAAS 502
AE+C + LM+ G++L G P+ L + S
Sbjct: 201 AEQCRDVLLMNEGELLYQGEPKALTQTMAGRS 232