Pairwise Alignments

Query, 200 a.a., IS3 family IS1397 transposase from Escherichia coli ECOR38

Subject, 512 a.a., IS3 family transposase from Agrobacterium fabrum C58

 Score =  176 bits (447), Expect = 5e-49
 Identities = 86/186 (46%), Positives = 128/186 (68%), Gaps = 3/186 (1%)

Query: 11  RLKKYRSYRGNMGLAAENILQRQFKAEAPCEKWVTDITEFRAGGQKLYLSPILDLFNGEI 70
           R +++ SY G +  A EN++ R F A+AP  KW+TDITEF+    K+YLSPI+D F+G +
Sbjct: 320 RRRRFGSYLGEISPAPENLINRDFHADAPNVKWLTDITEFQIPAGKVYLSPIIDCFDGMV 379

Query: 71  VAWETACRPTEELVKRMLNKGLESLAEG-EKPLLHSDQGWHYRIKSYQSALADKGLVQSM 129
           ++W    +P   LV  ML+  + ++A G E+P++HSD+G HYR   + + +++  LV+SM
Sbjct: 380 ISWSIGTQPDAGLVNTMLDAAIGTVANGEERPIIHSDRGAHYRWPGWLTRISEARLVRSM 439

Query: 130 SRKGNCLDNAVMENFFGHLKEEMYYRRDYR--SVEELENAVNEYITYWNQKRIKLSLGGL 187
           SRKG   DNA  E FFG LK E++Y RD++  ++E+    V+ YI ++N+KRIK+SLG L
Sbjct: 440 SRKGCSQDNAACEGFFGRLKTELFYPRDWKAITIEQFVAEVDAYIRWYNEKRIKISLGSL 499

Query: 188 SPVEYR 193
           SPVEYR
Sbjct: 500 SPVEYR 505