Pairwise Alignments

Query, 804 a.a., DNA topoisomerase (ATP-hydrolyzing) subunit B from Escherichia coli ECOR38

Subject, 805 a.a., DNA gyrase subunit B from Pseudomonas simiae WCS417

 Score = 1108 bits (2865), Expect = 0.0
 Identities = 539/802 (67%), Positives = 661/802 (82%), Gaps = 3/802 (0%)

Query: 3   NSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVT 62
           N+YDS+SIKVLKGLDAVRKRPGMYIGDTDDG+GLHHMVFEVVDN+IDEALAGHC +I + 
Sbjct: 5   NTYDSTSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDDISII 64

Query: 63  IHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSV 122
           IH D S++V+D+GRGIP  +H EEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSV
Sbjct: 65  IHPDESITVRDNGRGIPVDVHKEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSV 124

Query: 123 VNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEKTGTMVRFWPSLETFTNVTEF 182
           VNALS++L L ++R GKI  Q Y HGVP+ P+ + G++E TGT + F PS ETF N+  F
Sbjct: 125 VNALSEELILTVRRSGKIWEQTYVHGVPKEPMKIVGDSETTGTQIHFKPSAETFKNI-HF 183

Query: 183 EYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIFY 242
            ++ILAKR+RELSFLNSGV I L+D+R GKE+ F YEGG++AFVEYLN NKT ++  +F+
Sbjct: 184 SWDILAKRIRELSFLNSGVGIVLKDERSGKEELFKYEGGLRAFVEYLNTNKTAVN-QVFH 242

Query: 243 FSTEK-DGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEG 301
           F+ ++ DGIGVE+ALQWND F EN+ CFTNNIPQRDGGTHL GFR+A+TR LN Y++ EG
Sbjct: 243 FNIQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNLNTYIEAEG 302

Query: 302 YSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYL 361
            +KK KV+ TGDDAREGL A++SVKVPDPKFSSQTKDKLVSSEVK+AVEQ+M +  +++L
Sbjct: 303 LAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKYFSDFL 362

Query: 362 LENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSELY 421
           LENP +AK+VVGK+IDAARAREAAR+AREMTRRKGALD+AGLPGKLADCQE+DPALSELY
Sbjct: 363 LENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPALSELY 422

Query: 422 LVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRD 481
           LVEGDSAGGSAKQGRNR+ QAILPLKGKILNVEKARFDKM+SSQEV TLITALGCGIGRD
Sbjct: 423 LVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTLITALGCGIGRD 482

Query: 482 EYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKGK 541
           EYN DKLRYHNIIIMTDADVDGSHIRTLLLTFF+RQ+PE++ERG++YIAQPPLYKVKKGK
Sbjct: 483 EYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYIYIAQPPLYKVKKGK 542

Query: 542 QEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRMERRY 601
           QEQYIKDD+AM++Y    AL+ A+LH N  AP ++GE+LE+LV+++    K + R+ R Y
Sbjct: 543 QEQYIKDDDAMEEYMTQSALEDASLHLNDEAPGISGESLERLVNDFRMVMKTLKRLSRLY 602

Query: 602 PKAMLKELIYQPTLTETDLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNADQNLFE 661
           P+ + +  IY P ++   L D   +  W+      L   E+ G  +K  +  + ++N++ 
Sbjct: 603 PQELTEHFIYLPAVSLEQLGDHAAMQDWLAQYEVRLRTVEKSGLVYKASLREDRERNVWL 662

Query: 662 PIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVASFEQ 721
           P V + +HG+      + +F    +Y+ + TLG +L  LL++ A+I+RGER++ V  F++
Sbjct: 663 PEVELISHGLSNYVTFNRDFFGSNDYKTVVTLGAQLSTLLDDGAYIQRGERKKQVKEFKE 722

Query: 722 ALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLM 781
           ALDWL+ ES +  +IQRYKGLGEMNP+QLWETTMDP  RRMLRVT++DAI ADQ+F TLM
Sbjct: 723 ALDWLMAESTKRHTIQRYKGLGEMNPDQLWETTMDPAQRRMLRVTIEDAIGADQIFNTLM 782

Query: 782 GDAVEPRRAFIEENALKAANID 803
           GDAVEPRR FIE NAL  +N+D
Sbjct: 783 GDAVEPRRDFIESNALAVSNLD 804