Pairwise Alignments

Query, 804 a.a., DNA topoisomerase (ATP-hydrolyzing) subunit B from Escherichia coli ECOR38

Subject, 871 a.a., DNA gyrase subunit B (EC 5.99.1.3) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  920 bits (2379), Expect = 0.0
 Identities = 482/842 (57%), Positives = 598/842 (71%), Gaps = 44/842 (5%)

Query: 2   SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61
           S  Y   SI++L+GL+AVRKRPGMYIGDT DGTGLHH+VFEVVDN+IDEALAGHC +I+V
Sbjct: 35  SEGYGEGSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVVDNSIDEALAGHCDDIVV 94

Query: 62  TIHADNSVSVQDDGRGIPTGIHPEEGV----SAAEVIMTVLHAGGKFDDNSYKVSGGLHG 117
           TIH DNS+SV D+GRGIPTG+  ++      SA+E+ +T LHAGGKF+ NSYKVSGGLHG
Sbjct: 95  TIHTDNSISVVDNGRGIPTGVKMDDKHEPKRSASEIALTELHAGGKFNQNSYKVSGGLHG 154

Query: 118 VGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQ-------------APLAVTGETEKTG 164
           VGVS VNALSQ L L ++REG +H+  +  G  Q             +P+ +TG TEK G
Sbjct: 155 VGVSCVNALSQWLRLTVRREGHVHQLEFARGFVQNRVIETTPTGVEISPMRITGATEKRG 214

Query: 165 TMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKA 224
           T V F P  E F    +F YEIL+KRLRELSFLN+GV IRL+D+R GKED F   GG+K 
Sbjct: 215 TEVHFLPDYEIFRENADFHYEILSKRLRELSFLNNGVRIRLKDERSGKEDDFSGAGGVKG 274

Query: 225 FVEYLNKNKTPIHPNIFYF-----STEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGG 279
           FV+++NK KT +HPN+F+      S +   IGVEVA+QWN G+ E + CFTNNIPQRDGG
Sbjct: 275 FVDFINKGKTVLHPNVFHAMGDRQSDQGTNIGVEVAMQWNSGYNEQVLCFTNNIPQRDGG 334

Query: 280 THLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDK 339
           THL G RAAMTR +N Y+++   +KKAKV  TGDD REGL  V+SVKVP+PKFSSQTKDK
Sbjct: 335 THLTGLRAAMTRVINKYIEEHELAKKAKVEVTGDDMREGLCCVLSVKVPEPKFSSQTKDK 394

Query: 340 LVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALD 399
           LVSSEV+  VE  ++ LLA+YL E P DAKI+ GKI++AARAREAAR+AREMTRRKG LD
Sbjct: 395 LVSSEVRGPVEDIVSRLLADYLQERPNDAKIICGKIVEAARAREAARKAREMTRRKGVLD 454

Query: 400 LAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFD 459
             GLPGKLADCQE+DPAL E+Y+VEGDSAGGSAKQGR+RK QAILPL+GKILNVEKAR++
Sbjct: 455 GMGLPGKLADCQEKDPALCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKILNVEKARYE 514

Query: 460 KMLSSQEVATLITALGCGIGR----------DEYNPDKLRYHNIIIMTDADVDGSHIRTL 509
           K+L+S E+ TLITALG GIG+          D++N  KLRYH IIIMTDADVDG+HIRTL
Sbjct: 515 KLLTSNEILTLITALGTGIGKATGVGGTAGVDDFNVAKLRYHRIIIMTDADVDGAHIRTL 574

Query: 510 LLTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIAL-DGATLHT 568
           LLTFFYRQMPE+VERGH+YIAQPPLYKVK GK+E Y+KD  A+D + + IAL D + L  
Sbjct: 575 LLTFFYRQMPELVERGHIYIAQPPLYKVKAGKEELYLKDGSALDGFLLRIALKDASVLTG 634

Query: 569 NASAPALAGEALEKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTETDLSDEQTVTR 628
            A+   L G+ L +L  ++   + +I R+        L+ +     L    +   +    
Sbjct: 635 GATQTTLTGDTLGELARKHQVAESVIARLSNFMDAEALRAIADGVALNLDSVEQAE---- 690

Query: 629 WVNALVSELNDKEQHGSQWKFDVHTNADQNLFEPIVRV--RTHGVDTDYPLDHEFITGGE 686
            V+A+  +   +E   +    +V    D    +PI+R+  R HG      L  +F+ G +
Sbjct: 691 -VSAVALQAKLRELATTGVPAEVAAEFDVRTDKPILRISRRHHGNIKSSVLTQDFVHGAD 749

Query: 687 YRRICTLGEKLRGLLEEDAFIERGE----RRQPVASFEQALDWLVKESRRGLSIQRYKGL 742
           Y  + T  +  RGLL E A + RGE    + + V  F QA+ WL+ E+ R  S QRYKGL
Sbjct: 750 YAALATAADTFRGLLGEGAKVVRGEGDKQKEEKVGDFRQAMRWLISEAERTTSRQRYKGL 809

Query: 743 GEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEENALKAANI 802
           GEMNPEQLWETTMDP  RR+LRV + DAI AD++FT LMGD VEPRR FIE NAL+A NI
Sbjct: 810 GEMNPEQLWETTMDPTVRRLLRVQIDDAIEADRVFTMLMGDEVEPRRDFIETNALRAGNI 869

Query: 803 DI 804
           D+
Sbjct: 870 DV 871