Pairwise Alignments

Query, 294 a.a., ribose ABC transporter substrate-binding protein RbsB from Escherichia coli ECOR38

Subject, 312 a.a., substrate-binding domain-containing protein from Dickeya dadantii 3937

 Score =  155 bits (391), Expect = 1e-42
 Identities = 88/265 (33%), Positives = 149/265 (56%), Gaps = 5/265 (1%)

Query: 1   MKKLATLVSAVALSATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVL 60
           MKK+  + +A+A + +        + I      L  PF V ++  A K A +LG NL VL
Sbjct: 1   MKKITIMAAAMAFTMSSGLAQAQNEQIVFSTPNLAMPFEVHMQRTAVKAAKELGVNLQVL 60

Query: 61  DSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEV 120
           DSQ +  K++A++++   RG +  +++P D +AV  AV     A +PV+TLDR     + 
Sbjct: 61  DSQGSSPKQVADLENAITRGAQGFVVSPNDVNAVSGAVTEIQDAKLPVVTLDRSVKTDKK 120

Query: 121 VSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAA--HKFN 178
           V H  ++N  GG+   D++  +   GA ++ L G  G+S+  ER +G + ++ A   K+ 
Sbjct: 121 VPHFGANNYKGGQAIADFVKARFPNGADIVLLTGQPGSSSNIERTQGIRDSLKAGGSKYR 180

Query: 179 VLASQPADFDRTKGLNVMQNLLTAHPD-VQAVFAQNDEMALGALRALQTAG--KSDVMVV 235
           ++A Q  ++ R++G+ +++++L + P   Q + + ND+MALGA+ ALQ+ G    +VMV 
Sbjct: 181 LVADQTGNWMRSEGMRIVESVLPSLPKRPQVILSANDDMALGAIEALQSQGLKPGEVMVT 240

Query: 236 GFDGTPDGEKAVNDGKLAATIAQLP 260
           GFD  P+    V DG L+ T  Q P
Sbjct: 241 GFDAVPEALARVRDGWLSVTADQRP 265