Pairwise Alignments

Query, 281 a.a., glycerol uptake facilitator protein GlpF from Escherichia coli ECOR38

Subject, 251 a.a., porin from Pseudomonas simiae WCS417

 Score = 97.4 bits (241), Expect = 3e-25
 Identities = 77/243 (31%), Positives = 110/243 (45%), Gaps = 26/243 (10%)

Query: 13  AEFLGTGLLIFFGVG-CVAALKVAGASFGQWEISVIWGLGVAMAIYLTAGVSGAHLNPAV 71
           AEF+GT  L F G G  + A        G   +S+ +GL V    Y   G+SG H NPAV
Sbjct: 7   AEFIGTFWLTFGGCGSAILAAAFPELGIGFVGVSLAFGLTVLTMAYAVGGISGGHFNPAV 66

Query: 72  TIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVESVDL 131
           T+ LW        +V+P+I +QVAGA  A+A +Y L  N   DF        G       
Sbjct: 67  TLGLWAGRRVAAGEVLPYIAAQVAGAIGASAALY-LIANGQPDFAIGGFAANG------- 118

Query: 132 AGTFSTYPNPHINFVQAFAVEMVITAILMGLILALTDDGNGVPRGPLAPLLIGLLIAVIG 191
              +        +   A   E + T   + +I+ +T  G  VP    AP+ IGL + +I 
Sbjct: 119 ---YGPLSPGLFDMKAALLAECIATFFFLFIIMRVTSSG-AVP--GFAPIAIGLALTLIH 172

Query: 192 ASMGPLTGFAMNPARDFGPKVFAWLAGWGNVAFTGGRDIPYFLVPLFGPIVGAIVGAFAY 251
             + P+T  ++NPAR  GP +FA           GG  +    +    P+VG ++GA A 
Sbjct: 173 LVLIPVTNTSVNPARSTGPALFA-----------GGEYLAQLWLFWLAPMVGGVMGALAA 221

Query: 252 RKL 254
           R L
Sbjct: 222 RSL 224