Pairwise Alignments

Query, 489 a.a., Type I restriction enzyme EcoEI methylase subunit from Escherichia coli ECOR38

Subject, 513 a.a., Type I restriction enzyme EcoKI M protein from Pseudomonas sp. RS175

 Score =  173 bits (439), Expect = 1e-47
 Identities = 152/512 (29%), Positives = 249/512 (48%), Gaps = 62/512 (12%)

Query: 9   SLQDIMRKDAGVDGDAQRLGQLSWLLFLKIFDAQEEALELEQDNYQYPIPQRYLWRSWAA 68
           +L D++R D G++  +  + +L  LLF+K+   Q +      D++ + +P+   W   A+
Sbjct: 12  NLCDVLRDD-GINY-SDYVTELVLLLFIKMEFEQVQ----NNDSFTHKLPEGARWPDLAS 65

Query: 69  NAQGITGDSLLEFVNDDLFPALKNLTAPIDKNPRGYVVKQAFSDAYNYMKNGTLLRQVIN 128
            +    G +LL+     L    KN       +P   ++   ++DA   +K    L Q+I 
Sbjct: 66  KS----GLNLLDHYRQMLLDLGKN------SDP---LIAAIYADAQTRLKEPRHLEQLIK 112

Query: 129 KLNEIDFTSASERHLFGDIYEQILKD--LQSAGNAGEFYTPRAVTRFMVDRVDPKLGESI 186
            L+ ID+ SA  R   GD+YE +L+    ++   AG+++TPR +   ++  + P+ GE+I
Sbjct: 113 SLDGIDWFSA-RRDGLGDLYEGLLEKNASETKSGAGQYFTPRPLIDSIIRCIKPQPGETI 171

Query: 187 MDPACGTGGFLACAFDHVKNKYVKSVADHQTLQQQIH---------GVEKKQLPHLLATT 237
            DPA GT GFL  A  ++K     +  DH  L ++           G+E       LA  
Sbjct: 172 QDPAAGTAGFLIAADAYIKG----NTDDHYDLDEKARSFQRNRAFIGIELVPGTRRLALM 227

Query: 238 NMLLHGIEVPVQ--IRHDNTLNKPLSSWDEQLDVIVTNPPFGGTEEDGIEKNFPAEMQTR 295
           N LLHG+E   +  +   N L +  ++  + +DVI++NPPFG  +  G         +T 
Sbjct: 228 NTLLHGMEGDEEGVVHLGNALGQTGANLPK-VDVILSNPPFGTAKGGGGPTRDDLTYKTS 286

Query: 296 ETADLFLQLIVEVLAKNGRAAVVLPDGTLFGEGVKTKIKKLLTEECNLHTIVRLPNGVFN 355
                FLQ I   L   GRAAVVLPD  LF  GV T +++ L ++CNLHTI+RLP G+F 
Sbjct: 287 NKQLAFLQHIYRGLKPGGRAAVVLPDNVLFEAGVGTDVRRDLMDKCNLHTILRLPIGIFY 346

Query: 356 PYTGIKTNLLFFTKGQP---------TKEIWFYEHPYPAGVKNYSKTKPMKFEEFQAEID 406
              G+KTN+LFF KG           T+  W Y+    + +  + K  P   +  ++  D
Sbjct: 347 A-PGVKTNVLFFQKGTADNPRQDQGCTQRTWIYD--LRSNMPRFGKRTPFGAQHLKSFED 403

Query: 407 WWGNEADGFASRVENEQAWKV-------SIDDVIARNFNLD---IKNPHQAETVSHDPDE 456
            +G +A+G  +R EN +   V       S + V  R  +LD   IK+ +  + +     E
Sbjct: 404 SYGEDANGNGARAENVEGIGVISRFRVFSREQVKERGDSLDISWIKDANSLDALDLPAPE 463

Query: 457 LLAQYAKQQAEIQTLRNQLRDILGAALSGKEV 488
           +LA   +  AE+    + L +++ A  +  EV
Sbjct: 464 VLA--GEAMAELTETLHVLEELMKALGADDEV 493