Pairwise Alignments

Query, 335 a.a., type 1 fimbria D-mannose specific adhesin FimH from Escherichia coli ECOR38

Subject, 351 a.a., putative minor fimbrial subunit LpfD from Escherichia coli ECRC98

 Score = 92.4 bits (228), Expect = 1e-23
 Identities = 65/244 (26%), Positives = 111/244 (45%), Gaps = 8/244 (3%)

Query: 91  TIDNYKYMQLNDYLLGAMSLVDSVMDIQFPPQNYIRMGTDPNVSQNLPFGVMDSRLIFRL 150
           T+D+ KY  L + L  A ++  S     F P    +       ++ +    M    +   
Sbjct: 101 TVDSMKYYTLTEELEVATNIRISTSVYGFVPFKNQQALQTTGCNKVITTPYMGGAGLLSF 160

Query: 151 KVIRPFINMVEIPRQVMFTVYVTSTPNDPLVTPVYTISFGGRVEVPQNCELNAGQIVEFD 210
            + +PFI    IP  ++  +Y + T  D    P+ ++S  GRV V Q+CE+  G +++  
Sbjct: 161 AITKPFIGDSVIPLTLIAELYASKTNKDYGTIPISSVSIQGRVTVTQDCEIKPGTVLDVP 220

Query: 211 FGDIGASLFSAAGPGNRPAGVMPQTKSIAIKCTNVAAQAYLTMRLE--ASAVSGQAMVSD 268
           FG+  +S F     G  P G   Q  +++  C N++    + +RLE   +A   +A+   
Sbjct: 221 FGEFPSSAFKNR-QGQMPEGATEQEINLSFDCNNISDGIKVALRLEGATNADDPRAVDMG 279

Query: 269 NQDLGFIVADQNDTPITPNDLNSVIPFRLDAAAA-----ANVTLRAWPISITGQKPSEGP 323
           N D+G +V D +   + PND +S     L +  +     A + L A PIS TG+ P  G 
Sbjct: 280 NPDIGVLVKDSSGKILVPNDSSSTTLLNLSSLDSKTHRNAAIRLLALPISTTGKAPKGGT 339

Query: 324 FSAL 327
           F  +
Sbjct: 340 FEGV 343