Pairwise Alignments

Query, 335 a.a., type 1 fimbria D-mannose specific adhesin FimH from Escherichia coli ECOR38

Subject, 360 a.a., fimbrial protein from Escherichia coli ECRC101

 Score = 73.6 bits (179), Expect = 7e-18
 Identities = 57/204 (27%), Positives = 100/204 (49%), Gaps = 21/204 (10%)

Query: 143 DSRLIFRLKVIRPFINMVEIPRQVMFTVYVTSTPNDPLVTPVYTISFGGRVEVPQNCELN 202
           D+++ FR+K  R     V IP   +  +Y   +        +  +   G +  PQ+C++N
Sbjct: 164 DAKISFRIK--RSINGTVVIPITDIALLYANISSTTTRGEAIAKVRISGSLTAPQSCQIN 221

Query: 203 AGQIVEFDFGDIGASLFSA-AGPGNRPAGVMPQTKSIAIKCTNVAAQAYLTMRLEASAV- 260
           AGQ++ FDF  I AS FS+ AG       +   TK+++I+CT +  +   T +++AS   
Sbjct: 222 AGQVIYFDFDTIPASEFSSTAGQAITSRKI---TKTVSIECTGMGYER--TQKVDASFTG 276

Query: 261 ----SGQAMV-SDNQDLGFIVADQNDTPITPNDLNSVIPFRLDAAAA-----ANVTLRAW 310
               S   MV +DN D+G  + ++++  ++ N  N  +P  +           +VT  A 
Sbjct: 277 TNRSSDDTMVATDNADVGIKIYNKSNAEVSVN--NGKLPADMGNTTIFGRKNGSVTFSAA 334

Query: 311 PISITGQKPSEGPFSALGYLRVDY 334
           P S TG +P  G F+A   L +++
Sbjct: 335 PASFTGARPQPGVFNATATLTIEF 358