Pairwise Alignments

Query, 319 a.a., aliphatic sulfonate ABC transporter substrate-binding protein SsuA from Escherichia coli ECOR27

Subject, 317 a.a., aliphatic sulfonate ABC transporter substrate-binding protein from Agrobacterium fabrum C58

 Score =  227 bits (578), Expect = 3e-64
 Identities = 128/312 (41%), Positives = 189/312 (60%), Gaps = 9/312 (2%)

Query: 2   RNIIKLALVGLLSVSTIAVAAESSPEALRIGYQKGSIGMVLAKSHQLLEKRYPQS--KIS 59
           R  +   L+  +++S +  AA+++ E L+IGYQK  +  V+A+   ++EK       K+S
Sbjct: 6   RRALSAGLIAAVALSVLPFAAQAAEE-LKIGYQKTGLP-VIARQQGVIEKALEAKGVKVS 63

Query: 60  WVEFPAGPQMLEALNVGSIDLGSTGDIPPIFAQAAGADLVYVGVEPPKPKAEVILVAENS 119
           WVEF AGP ++EALNVGSI++G TGD PPIF QAAG+ +VYV   P   K E I     S
Sbjct: 64  WVEFTAGPPLVEALNVGSINVGWTGDAPPIFGQAAGSAIVYVAALPSNGKGEAIFTKPES 123

Query: 120 PIKTVADLKGHKVAFQKGSSSHNLLLRALRQAGLKFTDIQPTYLTPADARAAFQQGNVDA 179
            IK+VADLKG KV   KG+S+HNLL+ AL + GLK +DI  TYL+PADA AAF    +DA
Sbjct: 124 GIKSVADLKGKKVGVGKGTSAHNLLVAALEKNGLKLSDIDVTYLSPADAAAAFASDKIDA 183

Query: 180 WAIWDPYYSAALLQGGVRVLKDGTDLNQTGSFYLAARPYAEKNGAFIQGVLATFSEADAL 239
           WA+WDP+Y+ A  +     L   +D+    +++LA R YA+ +   I   +    EA   
Sbjct: 184 WAVWDPFYAIAETRYKPVTLARTSDVLDVKTYFLANRDYAKSHADTINTNVGALGEAAKW 243

Query: 240 TRSQREQSIALLAKTMGLP--APVIASYLDHRPPTTIKPVNAEVAALQQQTADLFYENRL 297
           + + R++  A L +  G+P  A  +A+   +R    I  ++ ++ A QQ+TAD FY   L
Sbjct: 244 SAANRDKVAAALHEVTGVPLEAQTLAA---NRSEFGITRIDDKIVASQQETADRFYRLGL 300

Query: 298 VPKKVDIRQRIW 309
           +PK++ I+  +W
Sbjct: 301 IPKQISIKDAVW 312