Pairwise Alignments

Query, 644 a.a., exoribonuclease II from Escherichia coli ECOR27

Subject, 784 a.a., exoribonuclease from Agrobacterium fabrum C58

 Score =  174 bits (442), Expect = 1e-47
 Identities = 143/461 (31%), Positives = 222/461 (48%), Gaps = 32/461 (6%)

Query: 189 REDLTALDFVTIDSASTEDMDDALFAKALPD----DKLQLIVAIADPTAWIAEGSKLDKA 244
           RED   L  +TID A  +D DDA++A+  P     D + + VAIAD + ++  G+ LD+ 
Sbjct: 288 REDWRDLPLITIDPADAKDHDDAVYAELDPSPDNPDGVIVTVAIADVSWYVRPGAPLDRE 347

Query: 245 AKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAAT 304
           A  R  + Y P   +PMLP  +S+DLCSL+    RP LA RMT S +G  + +  F    
Sbjct: 348 ALKRGNSVYFPDRVVPMLPERISNDLCSLKEGVDRPALAVRMTFSKEGR-KASHTFHRIM 406

Query: 305 IESKAKLVYDQVSDWLENTGDWQPES--EAIAEQVRLLAQICQRRGEWRHNHALVFKDRP 362
           ++S AKL Y Q    ++   D +  +  E I + +    ++ +R  + R    L   D P
Sbjct: 407 MKSAAKLSYQQAQAAIDGNPDDKTGTLLEPILKPLWHAYEVMKRGRDRRQPLEL---DMP 463

Query: 363 DYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPA 422
           + +  L   G V  +V   R  A++++EE MI AN+ AA  L  K    +Y VH     +
Sbjct: 464 ERKIQLRPDGTVDKVVIPERLDAHKLIEEMMIQANVAAAETLETKKQRLVYRVHDAPTLS 523

Query: 423 NADALAALLKTHGLHVDAEEVLTLDGFCK-LRRELDAQPTGFLDSRIRRFQSFAEISTEP 481
             + L   L T G+ +     +  + F   L R LD      ++  + R QS A  S E 
Sbjct: 524 KQEVLREFLGTIGISMAKGVAMRANSFNGILARALDTPHQIMVNEMVLRSQSQAIYSPEN 583

Query: 482 GPHFGLGLEAYATWTSPIRKYGDMINHR-LLKAVIKGETATRPQ-----DEITVQMAERR 535
             HFGL L  YA +TSPIR+Y D+I HR L+ ++  GE    PQ     D+I  +++   
Sbjct: 584 IGHFGLNLMKYAHFTSPIRRYADLIVHRALVGSLGLGEGGITPQEEATLDDIAAEISTFE 643

Query: 536 RLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAP--- 592
           R    AERD  + L A  L ++ G +  F   +  +++ G+ V L   GA  F+P     
Sbjct: 644 RRAMAAERDTVNRLIAHHLSERVGEE--FEGRVGGVTKAGLFVALPQFGADGFVPISTLG 701

Query: 593 ---FLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAE 630
              F +    + +  ++ G         Y++ D + V +AE
Sbjct: 702 TDYFFYDEAHQALTGEKTG-------LGYQLGDTVQVRLAE 735