Pairwise Alignments

Query, 245 a.a., flagellar type III secretion system pore protein FliP from Escherichia coli ECOR27

Subject, 247 a.a., flagellar biosynthesis protein flip from Pseudomonas simiae WCS417

 Score =  267 bits (682), Expect = 2e-76
 Identities = 139/247 (56%), Positives = 182/247 (73%), Gaps = 7/247 (2%)

Query: 1   MRRLLSVAPVLLWLITPLAFA----QLPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPA 56
           MR LL++   +L L  PLAF      +P IT      G Q +S+ +Q L+ +T+L+FIPA
Sbjct: 1   MRVLLTL---MLLLAAPLAFGADPLSIPAITLGTNATGAQEYSVSLQILLIMTALSFIPA 57

Query: 57  ILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPF 116
            +++MTSFTRIIIVF +LR ALG    P NQ+L G+ALFLT FIM+PV DK+   A QP+
Sbjct: 58  FVMLMTSFTRIIIVFSILRQALGLQQTPSNQILTGMALFLTLFIMAPVFDKVNQQALQPY 117

Query: 117 SEEKISMQEALEKGAQPLREFMLRQTREADLGLFARLANTGPLQGPEAVPMRILLPAYVT 176
             EK++ Q+A++K   P+++FML QTR +DL LF RL+    +  P+  P+ IL+PA+VT
Sbjct: 118 LAEKMTAQDAIDKAQGPIKDFMLSQTRSSDLELFMRLSKRTDIATPDQAPLTILVPAFVT 177

Query: 177 SELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLV 236
           SELKTAFQIGF IFIPFLIIDLV+ASVLMA+GMMM+ P  I+LPFK+MLFVLVDGW L++
Sbjct: 178 SELKTAFQIGFMIFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFKIMLFVLVDGWALII 237

Query: 237 GSLAQSF 243
           G+LA SF
Sbjct: 238 GTLAGSF 244