Pairwise Alignments

Query, 330 a.a., RNA polymerase sigma factor RpoS from Escherichia coli ECOR27

Subject, 616 a.a., RNA polymerase, sigma 70 (sigma D) factor from Pseudomonas putida KT2440

 Score =  212 bits (540), Expect = 2e-59
 Identities = 109/277 (39%), Positives = 175/277 (63%), Gaps = 3/277 (1%)

Query: 49  GATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRR---RMIESNLRLVVKI 105
           G     + A Q  L ++     LT  E     RR   G+  +RR    M+E+NLRLV+ I
Sbjct: 334 GEKNAAIVACQQKLIDLETETGLTVAEIKEINRRMSIGEAKARRAKKEMVEANLRLVISI 393

Query: 106 ARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTI 165
           A++Y NRGL  LDLI+EGN+GL++AV+KF+  RG++FSTYATWWIRQ I R+I +Q RTI
Sbjct: 394 AKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTI 453

Query: 166 RLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTP 225
           R+P+H+++ +N   R +R++  ++  EP+ EE+ E+++ P D + ++L++ +   S++TP
Sbjct: 454 RIPVHMIETINKLNRISRQMLQEMGREPTPEELGERMEMPEDKIRKVLKIAKEPISMETP 513

Query: 226 LGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEA 285
           +G D +  L D + D     P D    + +K++    L  L A++ +VL  RFG+     
Sbjct: 514 IGDDEDSHLGDFIEDSTMQSPIDVATVESLKEATRDVLSGLTAREAKVLRMRFGIDMNTD 573

Query: 286 ATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGL 322
            TLE+VG++  +TRER+RQI+ + LR+LR   +++ L
Sbjct: 574 HTLEEVGKQFDVTRERIRQIEAKALRKLRHPTRSEHL 610



 Score = 34.7 bits (78), Expect = 6e-06
 Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 9/78 (11%)

Query: 18  DENGVEVFD-----EKALVEEEPSDNDLAEEELLSQGATQ----RVLDATQLYLGEIGYS 68
           ++ G+ VF+     +  L+ E  +D   AEE   +  A +    R  D  ++Y+ E+G  
Sbjct: 51  NDMGINVFESAPDADALLLAEADTDEAAAEEAAAALAAVETDIGRTTDPVRMYMREMGTV 110

Query: 69  PLLTAEEEVYFARRALRG 86
            LLT E E+  A+R   G
Sbjct: 111 ELLTREGEIEIAKRIEEG 128