Pairwise Alignments

Query, 1034 a.a., multidrug efflux RND transporter permease subunit AcrF from Escherichia coli ECOR27

Subject, 1037 a.a., RND efflux system, inner membrane transporter CmeB from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score = 1271 bits (3288), Expect = 0.0
 Identities = 653/1032 (63%), Positives = 802/1032 (77%), Gaps = 2/1032 (0%)

Query: 1    MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60
            MANFFI RPIFAWVLAI+L + GALAI  LPV QYP +APP V ++ANYPGA AQT+++T
Sbjct: 1    MANFFIDRPIFAWVLAILLCLTGALAIFSLPVEQYPDLAPPNVRITANYPGASAQTLENT 60

Query: 61   VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120
            VTQVIEQNM G+DNLMYMSS S   G  TITL+F +GTDPD A  QVQN+LQ A   LPQ
Sbjct: 61   VTQVIEQNMTGLDNLMYMSSQSSGTGQATITLSFIAGTDPDEAVQQVQNQLQSAMRKLPQ 120

Query: 121  EVQQQGISVEKSSSSYLMVAGFVSDNPDTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA 180
             VQ QG++V K+  + ++   FVS +    + DI+DYVASN++D LSR+NGVGD+  +G+
Sbjct: 121  AVQDQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRVNGVGDIDAYGS 180

Query: 181  QYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRL 240
            QY+MRIWLD   LN +++T  DV + ++ QN QIA GQLGGTP++  Q LNA+I AQ+ L
Sbjct: 181  QYSMRIWLDPAKLNSFQMTTKDVTDAIESQNAQIAVGQLGGTPSVDKQALNATINAQSLL 240

Query: 241  KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANAL 300
            + P++F  +TLRVN DGS V+L DVA VELG E Y+ ++R NG PA+GLG+KLA+GAN +
Sbjct: 241  QTPQQFRDITLRVNQDGSEVKLGDVATVELGAEKYDYLSRFNGNPASGLGVKLASGANEM 300

Query: 301  DTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQ 360
             TAK +  +L EL  +FP G++    Y+TT FV+ SI +VVKTL EAI LVFLVMYLFLQ
Sbjct: 301  ATAKLVLDRLNELAQYFPHGLEYKIAYETTSFVKASIIDVVKTLLEAIALVFLVMYLFLQ 360

Query: 361  NMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVM 420
            N RATLIPTIAVPVVL+GTF++L AFGYSINTLTMF MVLAIGLLVDDAIVVVENVER+M
Sbjct: 361  NFRATLIPTIAVPVVLMGTFSVLYAFGYSINTLTMFAMVLAIGLLVDDAIVVVENVERIM 420

Query: 421  MEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMAL 480
             E+ L P+EAT KSM QIQGALVGIAMVLSAVF+PMAFFGG+TGAIYRQFSITIVSAM L
Sbjct: 421  SEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVSAMVL 480

Query: 481  SVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGRY 540
            SVLVA+ILTPALCATLLKP+       + GFFGWFN TF+ +   Y   V KIL  + R+
Sbjct: 481  SVLVAMILTPALCATLLKPLHKGEQHGQRGFFGWFNRTFNRNAERYEKGVAKILHRSLRW 540

Query: 541  LLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLKN 600
            +LIY L++ GMV LFLRLP+SFLP+ED+G+F T IQLP+G+TQ++T KV+++V +YY  +
Sbjct: 541  ILIYVLLLGGMVFLFLRLPTSFLPQEDRGMFTTSIQLPSGSTQQQTLKVVEKVENYYFTH 600

Query: 601  EKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIRDG 660
            EK N+ SVF+  G    G  QN    FV LK W+ R+    S+ A+I RA     +I++ 
Sbjct: 601  EKDNIMSVFSTVGSGPGGNGQNVARMFVRLKDWDARDPTTGSSFAIIERATKAFNQIKEA 660

Query: 661  FVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPNGL 720
             V   + PAI  LG++ GFD EL D AG GHDAL  AR+QL+ +A ++ +SL  VR NGL
Sbjct: 661  RVFASSPPAISGLGSSAGFDMELQDHAGAGHDALMAARDQLIELAGKN-SSLTRVRHNGL 719

Query: 721  EDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKVYVQADAKFRM 780
            +D+ Q ++++DQ KAQALGVS+ DIN T+ TA G +YVNDF+DRGRVKKVYVQA AK+RM
Sbjct: 720  DDSPQLQIDIDQRKAQALGVSIDDINDTLQTAWGSSYVNDFMDRGRVKKVYVQAAAKYRM 779

Query: 781  LPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSGDAM 840
            LP+D++  YVR+ +G MVPFSAF TS W  GSPRLERYNG  ++EI GEAAPG S+G AM
Sbjct: 780  LPDDINLWYVRNKDGGMVPFSAFATSRWETGSPRLERYNGYSAVEIVGEAAPGVSTGTAM 839

Query: 841  ALMENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSV 900
             +ME+L  +LP G G +WT MSYQERLSG QAPAL AIS +VVFLCLAALYESWS+P SV
Sbjct: 840  DVMESLVHQLPGGFGLEWTAMSYQERLSGAQAPALYAISLLVVFLCLAALYESWSVPFSV 899

Query: 901  MLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGVV 960
            MLVVPLG++G LLA  +   +NDVYF VGLLT IGLSAKNAILIVEFA + M ++G  ++
Sbjct: 900  MLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGLSAKNAILIVEFANE-MNQKGHALL 958

Query: 961  EATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIFF 1020
            +ATL A R RLRPILMTSLAFI GVLP+A S GAGSG+Q+AVG GVMGGM+SAT+LAIFF
Sbjct: 959  DATLYASRQRLRPILMTSLAFIFGVLPMATSTGAGSGSQHAVGTGVMGGMISATVLAIFF 1018

Query: 1021 VPVFFVVIRRCF 1032
            VP+FFV+IRR F
Sbjct: 1019 VPLFFVLIRRRF 1030