Pairwise Alignments

Query, 1034 a.a., multidrug efflux RND transporter permease subunit AcrF from Escherichia coli ECOR27

Subject, 1037 a.a., RND efflux system, inner membrane transporter CmeB from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score = 1800 bits (4663), Expect = 0.0
 Identities = 918/1032 (88%), Positives = 975/1032 (94%)

Query: 1    MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60
            MANFFIRRPIFAWVLAIILMMAGALAI+QLPVAQYPTIAPPAVS+SA YPGADAQTVQDT
Sbjct: 1    MANFFIRRPIFAWVLAIILMMAGALAIMQLPVAQYPTIAPPAVSISATYPGADAQTVQDT 60

Query: 61   VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120
            VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ
Sbjct: 61   VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120

Query: 121  EVQQQGISVEKSSSSYLMVAGFVSDNPDTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA 180
            EVQQQGISVEKSSSS+LMVAGFVSDNP+TTQDDISDYVASN+KD++SRLNGVGDVQLFGA
Sbjct: 121  EVQQQGISVEKSSSSFLMVAGFVSDNPNTTQDDISDYVASNIKDSISRLNGVGDVQLFGA 180

Query: 181  QYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRL 240
            QYAMRIWLDA+LLNKY+LTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRL
Sbjct: 181  QYAMRIWLDANLLNKYQLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRL 240

Query: 241  KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANAL 300
            K+PEEFGKVTLRVN+DGSVV LKDVAR+ELGGENYNV+ARINGKPA+GLGIKLATGANAL
Sbjct: 241  KDPEEFGKVTLRVNTDGSVVHLKDVARIELGGENYNVVARINGKPASGLGIKLATGANAL 300

Query: 301  DTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQ 360
            DTA AIK KLAELQPFFPQGMKV+YPYDTTPFV++SIHEVVKTLFEAI+LVFLVMYLFLQ
Sbjct: 301  DTATAIKVKLAELQPFFPQGMKVVYPYDTTPFVKISIHEVVKTLFEAIILVFLVMYLFLQ 360

Query: 361  NMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVM 420
            N+RATLIPTIAVPVVLLGTFA+LAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVM
Sbjct: 361  NIRATLIPTIAVPVVLLGTFAVLAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVM 420

Query: 421  MEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMAL 480
            MED L P+EATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMAL
Sbjct: 421  MEDNLSPREATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMAL 480

Query: 481  SVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGRY 540
            SVLVALILTPALCATLLKPVSAEHHE K GFFGWFNT FDHSVNHYTNSV  I+ +TGRY
Sbjct: 481  SVLVALILTPALCATLLKPVSAEHHEKKSGFFGWFNTRFDHSVNHYTNSVSGIVRNTGRY 540

Query: 541  LLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLKN 600
            L+IY LIV GM VLFLRLP+SFLPEEDQGVFLTMIQLP+GATQERTQKVLDQVT YYL N
Sbjct: 541  LIIYLLIVVGMAVLFLRLPTSFLPEEDQGVFLTMIQLPSGATQERTQKVLDQVTHYYLNN 600

Query: 601  EKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIRDG 660
            EKANVESVFTVNGFSFSGQ QN+GMAFVSLKPWEERNG+ENS EAVI RA     +IRDG
Sbjct: 601  EKANVESVFTVNGFSFSGQGQNSGMAFVSLKPWEERNGEENSVEAVIARATRAFSQIRDG 660

Query: 661  FVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPNGL 720
             V PFNMPAIVELGTATGFDFELIDQ GLGHDALT+ARNQLLGM A+HP  LV VRPNGL
Sbjct: 661  LVFPFNMPAIVELGTATGFDFELIDQGGLGHDALTKARNQLLGMVAKHPDLLVRVRPNGL 720

Query: 721  EDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKVYVQADAKFRM 780
            EDT QFKL+VDQEKAQALGVSLSDIN+TIS ALGG YVNDFIDRGRVKKVYVQADA+FRM
Sbjct: 721  EDTPQFKLDVDQEKAQALGVSLSDINETISAALGGYYVNDFIDRGRVKKVYVQADAQFRM 780

Query: 781  LPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSGDAM 840
            LP D++ LYVRSANGEMVPFS F+++ W+YGSPRLERYNG+PSME+ GEAAPG S+G+AM
Sbjct: 781  LPGDINNLYVRSANGEMVPFSTFSSARWIYGSPRLERYNGMPSMELLGEAAPGRSTGEAM 840

Query: 841  ALMENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSV 900
            +LMENLAS+LP GIGYDWTGMSYQERLSGNQAPAL AIS +VVFLCLAALYESWSIP SV
Sbjct: 841  SLMENLASQLPNGIGYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIPFSV 900

Query: 901  MLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGVV 960
            MLVVPLG+VG LLAA+L    NDVYF VGLLTTIGLSAKNAILIVEFAKDLMEKEG+G++
Sbjct: 901  MLVVPLGVVGALLAASLRGLNNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMEKEGRGLI 960

Query: 961  EATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIFF 1020
            EATL A RMRLRPILMTSLAFILGV+PL IS GAGSGAQNAVG GVMGGM++ATLLAIFF
Sbjct: 961  EATLEASRMRLRPILMTSLAFILGVMPLVISRGAGSGAQNAVGTGVMGGMLTATLLAIFF 1020

Query: 1021 VPVFFVVIRRCF 1032
            VPVFFVV++R F
Sbjct: 1021 VPVFFVVVKRRF 1032