Pairwise Alignments

Query, 1034 a.a., multidrug efflux RND transporter permease subunit AcrF from Escherichia coli ECOR27

Subject, 1037 a.a., multidrug transporter, RpoS-dependent (NCBI) from Escherichia coli BW25113

 Score = 1435 bits (3715), Expect = 0.0
 Identities = 725/1032 (70%), Positives = 846/1032 (81%), Gaps = 1/1032 (0%)

Query: 1    MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60
            MAN+FI RP+FAWVLAII+M+AG LAI+ LPVAQYP IAPP ++VSA YPGADAQTV+D+
Sbjct: 1    MANYFIDRPVFAWVLAIIMMLAGGLAIMNLPVAQYPQIAPPTITVSATYPGADAQTVEDS 60

Query: 61   VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120
            VTQVIEQNMNG+D LMYMSSTSD+AG+ +ITLTF++GT PDIAQVQVQNKLQLA P LP+
Sbjct: 61   VTQVIEQNMNGLDGLMYMSSTSDAAGNASITLTFETGTSPDIAQVQVQNKLQLAMPSLPE 120

Query: 121  EVQQQGISVEKSSSSYLMVAGFVSDNPDTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA 180
             VQQQGISV+KSSS+ LMVA F+SDN    Q DI+DYVASN+KD LSR  GVG VQLFG+
Sbjct: 121  AVQQQGISVDKSSSNILMVAAFISDNGSLNQYDIADYVASNIKDPLSRTAGVGSVQLFGS 180

Query: 181  QYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRL 240
            +YAMRIWLD   LNKY L P DVI+Q+KVQN+QI+ GQLGG P    QQLNASII QTRL
Sbjct: 181  EYAMRIWLDPQKLNKYNLVPSDVISQIKVQNNQISGGQLGGMPQAADQQLNASIIVQTRL 240

Query: 241  KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANAL 300
            + PEEFGK+ L+V  DGS V L+DVARVELG E+Y+ +AR NGKPAAG+ IKLA GANAL
Sbjct: 241  QTPEEFGKILLKVQQDGSQVLLRDVARVELGAEDYSTVARYNGKPAAGIAIKLAAGANAL 300

Query: 301  DTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQ 360
            DT++A+K +L  L  +FP  +K +YPYDTTPF+++SI EV KTL EAI+LVFLVMYLFLQ
Sbjct: 301  DTSRAVKEELNRLSAYFPASLKTVYPYDTTPFIEISIQEVFKTLVEAIILVFLVMYLFLQ 360

Query: 361  NMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVM 420
            N RAT+IPTIAVPVV+LGTFAIL+A G++INTLTMFGMVLAIGLLVDDAIVVVENVERV+
Sbjct: 361  NFRATIIPTIAVPVVILGTFAILSAVGFTINTLTMFGMVLAIGLLVDDAIVVVENVERVI 420

Query: 421  MEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMAL 480
             EDKLPPKEAT KSM QIQ ALVGIA+VLSAVF+PMAF  G+TG IYRQFSIT++S+M L
Sbjct: 421  AEDKLPPKEATHKSMGQIQRALVGIAVVLSAVFMPMAFMSGATGEIYRQFSITLISSMLL 480

Query: 481  SVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGRY 540
            SV VA+ LTPALCAT+LK      H+     F  FNT F+ S  HYT+S   +L  TGRY
Sbjct: 481  SVFVAMSLTPALCATILKAAPEGGHK-PNALFARFNTLFEKSTQHYTDSTRSLLRCTGRY 539

Query: 541  LLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLKN 600
            +++Y LI AGM VLFLR P+SFLPEEDQGVF+T  QLP+GAT   T KVL QVTDYYL  
Sbjct: 540  MVVYLLICAGMAVLFLRTPTSFLPEEDQGVFMTTAQLPSGATMVNTTKVLQQVTDYYLTK 599

Query: 601  EKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMELGKIRDG 660
            EK NV+SVFTV GF FSGQ QN G+AF+SLKPW ER G+ENS  A+I RA + L  I   
Sbjct: 600  EKDNVQSVFTVGGFGFSGQGQNNGLAFISLKPWSERVGEENSVTAIIQRAMIALSSINKA 659

Query: 661  FVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPNGL 720
             V PFN+PA+ ELGTA+GFD EL+D   LGH+ LTQARN+LL +AAQ P  +  VRPNGL
Sbjct: 660  VVFPFNLPAVAELGTASGFDMELLDNGNLGHEKLTQARNELLSLAAQSPNQVTGVRPNGL 719

Query: 721  EDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKVYVQADAKFRM 780
            EDT  FK+ V+  KA+A+GV+LSDINQTISTA G +YVNDF+++GRVKKVYVQA   FRM
Sbjct: 720  EDTPMFKVNVNAAKAEAMGVALSDINQTISTAFGSSYVNDFLNQGRVKKVYVQAGTPFRM 779

Query: 781  LPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSGDAM 840
            LP+++++ YVR+A+G M P SA++++ W YGSPRLERYNG+PSMEI GEAA G S+GDAM
Sbjct: 780  LPDNINQWYVRNASGTMAPLSAYSSTEWTYGSPRLERYNGIPSMEILGEAAAGKSTGDAM 839

Query: 841  ALMENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSV 900
              M +L +KLPAG+GY WTG+SYQE LS NQAPAL AIS VVVFL LAALYESWSIP SV
Sbjct: 840  KFMADLVAKLPAGVGYSWTGLSYQEALSSNQAPALYAISLVVVFLALAALYESWSIPFSV 899

Query: 901  MLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGVV 960
            MLVVPLG+VG LLA  L    NDVYF VGLLTTIGLSAKNAILIVEFA ++M+KEGK  +
Sbjct: 900  MLVVPLGVVGALLATDLRGLSNDVYFQVGLLTTIGLSAKNAILIVEFAVEMMQKEGKTPI 959

Query: 961  EATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIFF 1020
            EA + A RMRLRPILMTSLAFILGVLPL IS+GAGSGAQNAVG GVMGGM +AT+LAI+F
Sbjct: 960  EAIIEAARMRLRPILMTSLAFILGVLPLVISHGAGSGAQNAVGTGVMGGMFAATVLAIYF 1019

Query: 1021 VPVFFVVIRRCF 1032
            VPVFFVV+   F
Sbjct: 1020 VPVFFVVVEHLF 1031