Pairwise Alignments

Query, 367 a.a., branched chain amino acid ABC transporter substrate-binding protein LivJ from Escherichia coli ECOR27

Subject, 372 a.a., ABC transporter, substrate binding protein (amino acid) from Agrobacterium fabrum C58

 Score =  264 bits (675), Expect = 3e-75
 Identities = 140/345 (40%), Positives = 208/345 (60%), Gaps = 4/345 (1%)

Query: 15  LAFSNMALAEDIKVAVVGAMSGPVAQYGDQEFTGAEQAVADINAKGGIKGNKLQIVKYDD 74
           +AF   A A D+ +AV   ++GP A +G Q   GAEQA  DINA GGI G +++IV  DD
Sbjct: 15  VAFGGSAWA-DVVIAVGAPLTGPNAAFGAQIQKGAEQAAKDINAAGGINGEQIKIVLGDD 73

Query: 75  ACDPKQAVAVANKVVNDGIKYVIGHLCSSSTQPASDIYEDEGILMITPAATAPELTARGY 134
             DPKQ ++VANK V DG+K+V+GH  S  + PAS++Y + GIL ITPAAT P  T RG 
Sbjct: 74  VSDPKQGISVANKFVADGVKFVVGHFNSGVSIPASEVYAENGILEITPAATNPVFTERGL 133

Query: 135 QLILRTTGLDSDQGPTAAKYILEKVKPQRIAIVHDKQQYGEGLARAVQDGLKKGNANVVF 194
               RT G D  QG  A KY+ +  K  ++AI+HDK  YG+GLA   +          V 
Sbjct: 134 WNTFRTCGRDDQQGGIAGKYLADHFKDAKVAIIHDKTPYGQGLADETKKAANAAGVTEVM 193

Query: 195 FDGITAGEKDFSTLVARLKKENIDFVYYGGYHPEMGQILRQARAAGLKTQFMGPEGVANV 254
           ++G+  G+KDFS L++++K+  +  +Y+GG H E G I+RQA   GLK + +  +G+ + 
Sbjct: 194 YEGVNVGDKDFSALISKMKEAGVSIIYWGGLHTEAGLIIRQAADQGLKAKLVSGDGIVSN 253

Query: 255 SLSNIAGESAEGLLVTKPKNYDQVPANKPIVDAIKAKKQDPSGAFVWTTYAALQSLQAGL 314
            L++IAG++ EG L T   +    P NK +V+  KA   +P  A+   +YAA+Q++    
Sbjct: 254 ELASIAGDAVEGTLNTFGPDPTLRPENKELVEKFKAAGFNPE-AYTLYSYAAMQAIAGAA 312

Query: 315 NQ--SDDPAEIAKYLKANSVDTVMGPLTWDEKGDLKGFEFGVFDW 357
               S +P ++A+ LK  S  T +G +++DEKGD K   + +++W
Sbjct: 313 KAAGSVEPEKVAEALKKGSFPTALGEISFDEKGDPKLPGYVMYEW 357