Pairwise Alignments

Query, 278 a.a., HTH-type transcriptional activator RhaS from Escherichia coli ECOR27

Subject, 282 a.a., DNA-binding transcriptional activator, L-rhamnose-binding (RefSeq) from Escherichia coli BW25113

 Score =  167 bits (424), Expect = 2e-46
 Identities = 93/266 (34%), Positives = 144/266 (54%), Gaps = 4/266 (1%)

Query: 8   DFFPSGNASVAIEPRLPQADFPEHHHDFHEIVIVEHGTGIHVFNGQPYTITGGTVCFVRD 67
           DFF S   +VA+  R PQ  F EH HDF E+VIV  G G+HV N +PY IT G + ++  
Sbjct: 11  DFFASDQQAVAVADRYPQDVFAEHTHDFCELVIVWRGNGLHVLNDRPYRITRGDLFYIHA 70

Query: 68  HDRHLYEHTDNLCLTNVLYRSPDRFQFLAGLNQLLPQELDGQYPSHWRVNHSVLQQVRQL 127
            D+H Y   ++L L N++Y  P+R +        +P         HWR+    + Q RQ+
Sbjct: 71  DDKHSYASVNDLVLQNIIY-CPERLKLNLDWQGAIPGFNASAGQPHWRLGSMGMAQARQV 129

Query: 128 VAQMEQQEGENDLPSTASREILFMQLLLLLRKSSLQENL---ENSASRLNLLLAWLEDHF 184
           + Q+E +  ++   +    E+LF QL++LL +     +     +S + L+ L+  L    
Sbjct: 130 IGQLEHESSQHVPFANEMAELLFGQLVMLLNRHRYTSDSLPPTSSETLLDKLITRLAASL 189

Query: 185 ADEVNWDAVADQFSLSLRTLHRQLKQQTGLTPQRYLNRLRLMKARHLLRHSEASVTDIAY 244
                 D   D+ S S R L +Q +QQTG+T  +YL ++R+  A++LL+HS   ++DI+ 
Sbjct: 190 KSPFALDKFCDEASCSERVLRQQFRQQTGMTINQYLRQVRVCHAQYLLQHSRLLISDIST 249

Query: 245 RCGFSDSNHFSTLFRREFNWSPRDIR 270
            CGF DSN+FS +F RE   +P   R
Sbjct: 250 ECGFEDSNYFSVVFTRETGMTPSQWR 275