Pairwise Alignments

Query, 285 a.a., RNA polymerase sigma factor RpoH from Dickeya dianthicola ME23

Subject, 284 a.a., RNA polymerase sigma 70 from Pseudomonas simiae WCS417

 Score =  335 bits (860), Expect = 5e-97
 Identities = 171/286 (59%), Positives = 216/286 (75%), Gaps = 3/286 (1%)

Query: 1   MTKDMQ-TFALVPQGSLEGYIRAANAYPMLTAEEERALAERLHYHGDLDAAKQLILSHLR 59
           MT  +Q  +ALVP  +LE Y+   N+ P+LT E+ER LAE L+Y  DL AA+Q++L+HLR
Sbjct: 1   MTTSLQPAYALVPGANLEAYVHTVNSIPLLTPEQERELAESLYYEQDLGAARQMVLAHLR 60

Query: 60  FVIHVARNYSGYGLPQADLIQEGNIGLMKAVRRFNPDVGVRLVSFAVHWIKAEIHEYVLR 119
           FV+H+AR+YSGYGL QADLIQEGN+GLMKAV+RFNP++GVRLVSFAVHWIKAEIHE++LR
Sbjct: 61  FVVHIARSYSGYGLAQADLIQEGNVGLMKAVKRFNPEMGVRLVSFAVHWIKAEIHEFILR 120

Query: 120 NWRIVKVATTKAQRKLFFNLRKTKQRLGWFNQDEVELVARELGVTSKDVREMESRMAAQD 179
           NWRIVKVATTKAQRKLFFNLR  K+RL W N +EV  VA  LGV  ++VREMESR+   D
Sbjct: 121 NWRIVKVATTKAQRKLFFNLRSQKKRLAWLNNEEVHRVAESLGVEPREVREMESRLTGHD 180

Query: 180 MTFDPSPEDDAQPGQPMAPMLYLQDKSSDFADGIEEDNWETHAADKLTYALEGLDERSQH 239
           M FDP+ E D       +P  YL+D   D A  +E+ +W  ++   L  ALE LD+RS+ 
Sbjct: 181 MAFDPAAEAD-DDSAFQSPANYLEDHRYDPARQLEDADWSDNSNHNLHEALEVLDDRSRD 239

Query: 240 IIRARWLDDDNKSTLQELADHYGVSAERIRQLEKNAMKKLRVAIEA 285
           I+  RWL ++ K+TL +LA  Y VSAERIRQLEK+AM KL+++I A
Sbjct: 240 ILYQRWLAEE-KATLHDLAQKYNVSAERIRQLEKSAMNKLKLSIAA 284