Pairwise Alignments

Query, 285 a.a., RNA polymerase sigma factor RpoH from Dickeya dianthicola ME23

Subject, 334 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

 Score =  108 bits (270), Expect = 2e-28
 Identities = 81/275 (29%), Positives = 133/275 (48%), Gaps = 26/275 (9%)

Query: 19  YIRAANAYPMLTAEEERALAERLHYHGDLDAAKQLILSHLRFVIHVARNYSGYGLPQADL 78
           Y+      P+LT EEE   A RL   GD    K++I S+LR V+ +AR Y   GL   DL
Sbjct: 66  YLNEIGFSPLLTPEEEVHFA-RLSQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDL 124

Query: 79  IQEGNIGLMKAVRRFNPDVGVRLVSFAVHWIKAEIHEYVLRNWRIVK--VATTKAQRKLF 136
           I+EGN+GL++AV +F+P+ G R  ++A  WI+  I   ++   R ++  +   K      
Sbjct: 125 IEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHVVKELNVYL 184

Query: 137 FNLRKTKQRLGWFNQDEVELVARELGVTSKDVREM---ESRMAAQDMTFDPSPE----DD 189
              R+  Q+L   ++   E +A  L     +V+ M     R+++ D++  P  +    D 
Sbjct: 185 RAARELTQKLD--HEPSPEEIANLLEKPVGEVKRMLGLNERVSSVDVSLGPDSDKTLLDT 242

Query: 190 AQPGQPMAPMLYLQDKSSDFADGIEEDNWETHAADKLTYALEGLDERSQHIIRARWLDDD 249
               +P  P   LQD   D +  I  D W +   DK          + + +IR   L   
Sbjct: 243 LTDDRPTDPCELLQD--DDLSQSI--DQWLSELTDK----------QREVVIRRFGLRGH 288

Query: 250 NKSTLQELADHYGVSAERIRQLEKNAMKKLRVAIE 284
             STL+++    G++ ER+RQ++   +K+LR  +E
Sbjct: 289 ESSTLEDVGLEIGLTRERVRQIQVEGLKRLREILE 323