Pairwise Alignments

Query, 285 a.a., RNA polymerase sigma factor RpoH from Dickeya dianthicola ME23

Subject, 348 a.a., RNA polymerase sigma factor RpoS from Variovorax sp. SCN45

 Score = 96.3 bits (238), Expect = 9e-25
 Identities = 79/276 (28%), Positives = 126/276 (45%), Gaps = 28/276 (10%)

Query: 19  YIRAANAYPMLTAEEE--RALAERLHYHGDLDAAKQLILSHLRFVIHVARNYSGYGLPQA 76
           Y+R      + T  EE   A A R    GD  A + +I  +LR V+ +A+ Y G G+P +
Sbjct: 73  YLRQVRRTELFTPAEEYQAACAARA---GDFAARQSMIEHNLRLVVSIAKGYLGRGVPMS 129

Query: 77  DLIQEGNIGLMKAVRRFNPDVGVRLVSFAVHWIKAEIHEYVLRNWRIVKVATTKAQRKLF 136
           DLI+EGN+GLM A+ +F P+ G R  ++A  WI+  +   V+   R +++      R+L 
Sbjct: 130 DLIEEGNLGLMHAITKFEPERGFRFSTYATWWIRQSVERAVMTQARAIRL-PVHVVRELQ 188

Query: 137 FNLRKTKQRLGWFNQDEVELVARELGVTSKDVREMESR--MAAQDMTFDPSPEDDAQPGQ 194
             LR  +   G    D   L  R  GV  +D+  +  R   A  D+            G 
Sbjct: 189 QVLRARRTLEG----DAEFLAHRPDGVRVEDIAALLGRDVQAVADLLALAEAPRSLDAGD 244

Query: 195 PMAPMLYLQDKSSDFADGIEEDNWE------THAAD---KLTYALEGLDERSQHIIRARW 245
                    D     AD +  D+ +      THA +    L   +  LD R + ++  R+
Sbjct: 245 ARG------DDGFTLADTVASDDEQSSPSGATHAHEVERLLDQWVHALDAREREVLEGRY 298

Query: 246 -LDDDNKSTLQELADHYGVSAERIRQLEKNAMKKLR 280
            L D    TL+ L+   G++ ER+RQ++  A+ K+R
Sbjct: 299 GLHDREPETLEVLSVRLGLTRERVRQIQNEALAKMR 334