Pairwise Alignments

Query, 981 a.a., RNA polymerase-associated protein RapA from Dickeya dianthicola ME23

Subject, 1137 a.a., Superfamily II DNA/RNA helicases, SNF2 family from Echinicola vietnamensis KMM 6221, DSM 17526

 Score = 63.9 bits (154), Expect = 6e-14
 Identities = 94/452 (20%), Positives = 187/452 (41%), Gaps = 48/452 (10%)

Query: 187  LLADEVGLGKTIEAGMIIHQQLLAGRAERVLIVVPETLQHQWLVEMLRRFNLLFSLFDDE 246
            +LAD++GLGKT++   ++      G  +  LIV  +TL + W  E   +F    ++   +
Sbjct: 699  ILADDMGLGKTLQVLTLLLHTKETGGKQPNLIVATKTLLYNW-EEQTAKFTPNLTIC--K 755

Query: 247  RYAEARLDSDNPFETEQLIICSLDFVRRNPSRFEQLLDADWDLLVVDEAHHLVWSEAAPS 306
             Y ++R           LII + D V+ +   F  +   ++  L+ DEA  +   +   +
Sbjct: 756  YYGQSRKKLQKELRHHDLIITTYDTVKSDIRFFGNM---EFQYLITDEAQAI---KNTGT 809

Query: 307  AGYKAIECLARAIPAVLLLTATPEQLGQESHFARLRLLDPNRFHDYHEFIAEQQQYRPVA 366
              YKAI  L       L L+ TP +      +A +  ++P        F   +  +R   
Sbjct: 810  DRYKAISLLNAQFR--LALSGTPIENSVMDLYALMNFVNPG-------FFGTEANFR--- 857

Query: 367  DAVTLLLSGNRINDSER-NALGDMLGEQDIEPLLKSIASDSEDSAAARQELITMLMDRHG 425
                + L   R++ S R  AL     +  I+P +     +       ++  + +  +   
Sbjct: 858  ---NIFLEKGRVDKSPRMEAL-----QTAIKPFILRRTKEKVAKDLPKKTEMVLYCEMEP 909

Query: 426  TSRVLFRNTRQGVKGFPKRELHQIKLPLPTQYQTAIRV-SGIMNTRKSAEDCARDMLYPE 484
              R  + + R   KG    EL   K+      ++ ++V  G+M  R+    C   +L P+
Sbjct: 910  EQRKAYESLRNYFKG----ELED-KISKEGLNKSNLKVLEGLMRLRQV---CDHPVLVPD 961

Query: 485  QIYQQFEDDNATWWSFDPRVEWMLDFLTSHRDEKVLVICAKAATALQLEQVLRTREAIRA 544
              +  ++ ++A     D  +E +L+   +H+    L++ ++    L+L      +E I+ 
Sbjct: 962  --HYNYKGNSA---KMDALMEQILEKTGNHK----LLVFSQFTGMLKLIAKALEKEGIQY 1012

Query: 545  AVFHEGLSILERDRAAAYFASEEEGAQVLICSEIGSEGRNFQFASHLIMFDLPFNPDLLE 604
            +      S + R +A   F  +E     L+  + G  G N     ++ + D  +NP +  
Sbjct: 1013 SYLDGQTSEISRRKAVQDFQEDESVRVFLLSLKAGGSGLNLTAGDYVFLVDPWWNPAVES 1072

Query: 605  QRIGRLDRIGQSRDIQILVPYLENTAQALLVR 636
            Q I R  RIGQ + +       ++T +  +++
Sbjct: 1073 QAIDRCYRIGQDKKVMAYRMICKDTVEEKILQ 1104