Pairwise Alignments

Query, 393 a.a., outer membrane protein assembly factor BamB from Dickeya dianthicola ME23

Subject, 591 a.a., dehydrogenase from Pseudomonas simiae WCS417

 Score = 55.5 bits (132), Expect = 4e-12
 Identities = 42/152 (27%), Positives = 74/152 (48%), Gaps = 18/152 (11%)

Query: 47  VWSRSVGDGIGEFYSNLHPIWQDSRVYAADRHGTVKALDLNSGEEKWRADLAEKTGLLSS 106
           VW+ S G G  +      P+ +D  +Y    +  V A+D  +G++ W+ D      L   
Sbjct: 73  VWAFSFG-GEKQRGQQAQPMIKDGVMYLTGSYSRVFAVDARTGKKLWQYDAR----LPDD 127

Query: 107 NRPA--LLSGGVAVSGNHVYVGSERAQLFALNADDGTLQWQTKVAG-----EVLSSPVVS 159
            RP   +++ GVA+ G+ V+ G+  A+L ALN D G + W  KVA       + ++P+V 
Sbjct: 128 IRPCCDVINRGVALYGDLVFFGTLDAKLVALNKDTGKVVWSKKVADHKEGYSISAAPLVI 187

Query: 160 DGMVIIHTSN------GMLQALSESDGTIKWT 185
           +G +I   +       G ++A    +G + W+
Sbjct: 188 NGKLITGVAGGEFGVVGKIEAYDPKNGELLWS 219



 Score = 45.8 bits (107), Expect = 3e-09
 Identities = 39/151 (25%), Positives = 64/151 (42%), Gaps = 20/151 (13%)

Query: 252 PVVASNVVYALGYNGNLTALDLRSGQITWKREIGSVNDF-----------IVDGDRIYLV 300
           P++   V+Y  G    + A+D R+G+  W+ +    +D             + GD ++  
Sbjct: 90  PMIKDGVMYLTGSYSRVFAVDARTGKKLWQYDARLPDDIRPCCDVINRGVALYGDLVFFG 149

Query: 301 DQDDRITALNTNGGVVIWRQGDLLHRN----LTAPALYNGYLVVGDAEGYLHWVNTTDGR 356
             D ++ ALN + G V+W +    H+       AP + NG L+ G A G    V    G+
Sbjct: 150 TLDAKLVALNKDTGKVVWSKKVADHKEGYSISAAPLVINGKLITGVAGGEFGVV----GK 205

Query: 357 FVVQQKVDGSGLLSKPVVASDKLLVQAKDGE 387
                  +G  L S+P V      V  KDG+
Sbjct: 206 IEAYDPKNGELLWSRPTVEGHMGYVY-KDGK 235



 Score = 42.0 bits (97), Expect = 5e-08
 Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 10/82 (12%)

Query: 76  DRHGTVKALDLNSGEEKWRADLAEKTGLLSSNRPALLSGGVAVSGNHVYVGSERAQLFAL 135
           D  G ++A+D  +G+E WR            N   L  G +   GN V+ G+    L A 
Sbjct: 467 DYIGVLRAIDPKTGKEVWR----------HKNFAPLWGGVLTTKGNLVFTGTPEGFLQAF 516

Query: 136 NADDGTLQWQTKVAGEVLSSPV 157
           NA  G   W+ +    VL SPV
Sbjct: 517 NAKTGEKVWEFQTGSGVLGSPV 538



 Score = 27.7 bits (60), Expect = 0.001
 Identities = 62/287 (21%), Positives = 103/287 (35%), Gaps = 73/287 (25%)

Query: 120 GNHVYVGSERAQLFALNADDGTLQWQTKV----------AGEVLSSPVVSDGMVIIHTS- 168
           G+++Y  S      ALN DDGT++W  +             E++S      G  I   + 
Sbjct: 292 GDNLYSSSR----LALNPDDGTIKWHFQTTPHDGWDYDGVNELVSFNYTEGGKEIKAAAT 347

Query: 169 ---NGMLQALSESDG----------TIKWTVNLDMPSLSLRGESAPTAAFGAAIVGGDNG 215
              NG    L  ++G           I W   LD     +  +++   A G+   G    
Sbjct: 348 ADRNGFFYVLDRTNGKFIRGFPFVDKITWATGLDKDGRPIYNDASRPGAPGSEAKG---- 403

Query: 216 RVSAVMINQGQLIWQQRISQPGGATEIARLNDVDTTPVVASNVVYALGYNGNLTALDLRS 275
             ++V +                    A L   +  P+  +          N   +D+ +
Sbjct: 404 --TSVFVAP------------------AFLGAKNWMPMAYNRDTGLFYVPSNEWGMDMWN 443

Query: 276 GQITWKREIGSVNDFIVDGDRIYLVDQD--DRITALNTNGGVVIWRQGDLLHRNLTAPAL 333
             I +K+       F+  G  I  +++D    + A++   G  +WR     H+N  AP L
Sbjct: 444 EGIAYKKGAA----FLGAGFTIKPLNEDYIGVLRAIDPKTGKEVWR-----HKNF-AP-L 492

Query: 334 YNGYLV-------VGDAEGYLHWVNTTDGRFVVQQKVDGSGLLSKPV 373
           + G L         G  EG+L   N   G  V + +  GSG+L  PV
Sbjct: 493 WGGVLTTKGNLVFTGTPEGFLQAFNAKTGEKVWEFQT-GSGVLGSPV 538