Pairwise Alignments

Query, 260 a.a., flagellar type III secretion system protein FliR from Dickeya dianthicola ME23

Subject, 261 a.a., flagellar biosynthesis protein FliR from Pseudomonas simiae WCS417

 Score =  172 bits (435), Expect = 8e-48
 Identities = 94/257 (36%), Positives = 152/257 (59%), Gaps = 6/257 (2%)

Query: 1   MVTLSSIDMISWFNQFFWPLVRILALISTAPIFNERAITRRVKLGLGVLIAIVVTPSIPH 60
           ++ L+   + +W   F  P+ R+ A++   P+F    + RRV+L   V I +V+ P +P 
Sbjct: 4   LLALTDTQISTWVASFILPMFRVTAMLMAMPVFGTTLVPRRVRLYFAVAITVVIVPGLPP 63

Query: 61  TS-IPVFSATGVWMLFQQVLIGVMLGFAMQLAFVAIRLAGEIIGLQMGLSFATFFDPSGG 119
              +     + + ++ +Q+LIG ++GF++ L F A  +AG+II +QMG+ FA+  DP+ G
Sbjct: 64  MPPVNAIDLSALLLIAEQILIGALMGFSLTLFFQAFVVAGQIISIQMGMGFASMVDPTNG 123

Query: 120 PNMPVIARFMNLLALLLFLSMNGHLWLISLLVDSFHTIPISAEPISGNVFMTLAEAGGRI 179
            +  VI +F+ +L  LLFL+MNGHL    ++ +SF T+P+ +  +  N F  +    G +
Sbjct: 124 VSAAVIGQFLTMLVTLLFLAMNGHLVAFEVMTESFTTLPVGSGLVV-NHFWEVVGRLGWV 182

Query: 180 FSNGLMLALPLITLLLTINMALGLLSRLAPQLTIFAIGFPITLF--AGITTVGFLVFLLS 237
           F   L+L LP IT LL +N+A G+++R APQL IF+IGFP+TL    GI  VG L  +L+
Sbjct: 183 FGASLLLVLPAITALLVVNIAFGVMTRAAPQLNIFSIGFPLTLVLGMGIFWVG-LADILN 241

Query: 238 PYAEKLFGETYDLLADL 254
            Y + L  +    L DL
Sbjct: 242 QY-QPLATDALQFLRDL 257