Pairwise Alignments

Query, 260 a.a., flagellar type III secretion system protein FliR from Dickeya dianthicola ME23

Subject, 263 a.a., Type III secretion inner membrane protein (YscT,HrcT,SpaR,EscT,EpaR1,homologous to flagellar export components) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score = 87.4 bits (215), Expect = 3e-22
 Identities = 58/214 (27%), Positives = 109/214 (50%), Gaps = 6/214 (2%)

Query: 22  RILALISTAPIFNERAITRRVKLGLGVLIAIVVTPSIPHTSIPVFSATGVWMLFQQVLIG 81
           R+  +    P  N   ++   +  + +L+A+ V P   + + P  S   + ++ Q+  +G
Sbjct: 22  RVAPIFFFLPFLNSGVLSGAPRNAIIILVALGVWPHALNEAPPFLSVAMIPLVLQEAAVG 81

Query: 82  VMLGFAMQLAFVAIRLAGEIIGLQMGLSFATFFDPSGGPNMPVIARFMNLLALLLFLSMN 141
           VMLG  +   F  +   G II  Q G + ++  DP+ G +   +A F+N+ A +++L   
Sbjct: 82  VMLGCLLSWPFWVMHALGCIIDNQRGATLSSSIDPANGIDTSEMANFLNMFAAVVYLQNG 141

Query: 142 GHLWLISLLVDSFHTI-PISAEPISGNVFMTLAEAGGRIFSNGLMLALPLITLLLTINMA 200
           G + ++ +L  S+    P++    S    +T      ++  N L+LA P++ +LL   + 
Sbjct: 142 GLVTMVDVLNKSYQLCDPMNECTPSLPPLLTFI---NQVAQNALVLASPVVLVLLLSEVF 198

Query: 201 LGLLSRLAPQLTIFAIGFPITLFAGITTVGFLVF 234
           LGLLSR APQ+  FAI   +T+ +GI  +  L++
Sbjct: 199 LGLLSRFAPQMNAFAIS--LTVKSGIAVLIMLLY 230