Pairwise Alignments

Query, 240 a.a., RNA polymerase sigma factor FliA from Dickeya dianthicola ME23

Subject, 666 a.a., RNA polymerase sigma factor RpoD from Xanthobacter sp. DMC5

 Score = 77.0 bits (188), Expect = 9e-19
 Identities = 51/198 (25%), Positives = 97/198 (48%), Gaps = 8/198 (4%)

Query: 43  DLLQAGGIGLLSAVERYDSLQGTAFTTYAVQRIRGAMLDELRSRDWA---PRSVRRNARE 99
           DL+Q G IGL+ AV++++  +G  F+TYA   IR A+   +  +      P  +     +
Sbjct: 456 DLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINK 515

Query: 100 VAQAMQQAEQSLGRAPTEQEVAQTLNISLEEYRQILLDTNNSQLFSYDEWREEHGDSAEA 159
           + +  +Q    +GR PT +E+A+ L + LE+ R++L               EE     + 
Sbjct: 516 IVRTSRQMLHEIGREPTPEELAEKLGMPLEKVRKVLKIAKEPISLETPIGDEEDSHLGD- 574

Query: 160 LLEGNEEANPLNQLMDVNLRQRVMDAIDNLPEREKMVLTLYYQEELN----LKEIGAVLE 215
            +E      P++  +  NLR+     + +L  RE+ VL + +   +N    L+E+G    
Sbjct: 575 FIEDKNAILPIDAAIQSNLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFS 634

Query: 216 VGESRVSQLHSQAIKRLR 233
           V   R+ Q+ ++A+++L+
Sbjct: 635 VTRERIRQIEAKALRKLK 652