Pairwise Alignments

Query, 240 a.a., RNA polymerase sigma factor FliA from Dickeya dianthicola ME23

Subject, 616 a.a., RNA polymerase subunit sigma-70 from Pseudomonas simiae WCS417

 Score = 72.0 bits (175), Expect = 3e-17
 Identities = 48/204 (23%), Positives = 100/204 (49%), Gaps = 8/204 (3%)

Query: 43  DLLQAGGIGLLSAVERYDSLQGTAFTTYAVQRIRGAMLDELRSRDWA---PRSVRRNARE 99
           DL+Q G IGL+ AV++++  +G  F+TYA   IR A+   +  +      P  +     +
Sbjct: 406 DLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINK 465

Query: 100 VAQAMQQAEQSLGRAPTEQEVAQTLNISLEEYRQILLDTNNSQLFSYDEWREEHGDSAEA 159
           + +  +Q  Q +GR PT +E+ + + +  ++ R++L               +E     + 
Sbjct: 466 LNRISRQMLQEMGREPTPEELGERMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGD- 524

Query: 160 LLEGNEEANPLNQLMDVNLRQRVMDAIDNLPEREKMVLTLYYQEELN----LKEIGAVLE 215
            +E +   +P++     +L++   D +  L  RE  VL + +  ++N    L+E+G   +
Sbjct: 525 FIEDSTMQSPIDVATVESLKEATRDVLSGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFD 584

Query: 216 VGESRVSQLHSQAIKRLRAKLMSD 239
           V   R+ Q+ ++A+++LR    S+
Sbjct: 585 VTRERIRQIEAKALRKLRHPTRSE 608