Pairwise Alignments

Query, 240 a.a., RNA polymerase sigma factor FliA from Dickeya dianthicola ME23

Subject, 246 a.a., flagellar biosynthesis sigma factor from Pseudomonas simiae WCS417

 Score =  210 bits (535), Expect = 2e-59
 Identities = 120/238 (50%), Positives = 150/238 (63%), Gaps = 12/238 (5%)

Query: 5   YTAEGTMDKNSLWKRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLSAVERYDSLQG 64
           Y       +  L +RY PLV+  A  L  RLPASV+++DL+QAG IGLL    +YD+ +G
Sbjct: 9   YKRSARDSQGELIERYAPLVKRIAYHLLARLPASVQVEDLIQAGMIGLLEVSTKYDASKG 68

Query: 65  TAFTTYAVQRIRGAMLDELRSRDWAPRSVRRNAREVAQAMQQAEQSLGRAPTEQEVAQTL 124
            +F TYA  RIRGAMLDE+R  DWAPRSV RN R V+ A++  E   GR   + EVA  L
Sbjct: 69  ASFETYAGIRIRGAMLDEVRKGDWAPRSVHRNTRMVSDAIRAIEAKTGRDAKDHEVAAEL 128

Query: 125 NISLEEYRQILLDTNNSQLFSYDEWREE------HGDSAEALLEGNEEANPLNQLMDVNL 178
            +SL++Y  IL DT  S+LFS+D+  ++      H D A A +E      P   L D   
Sbjct: 129 QLSLDDYYGILNDTLGSRLFSFDDLLQDGEHEGLHEDGASAHME------PSRDLEDERF 182

Query: 179 RQRVMDAIDNLPEREKMVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRAKL 236
           +  + DAI NLPERE++VL LYY EELNLKEIG VL V ESRVSQLHSQ   RLR +L
Sbjct: 183 QGALADAIANLPERERLVLALYYDEELNLKEIGEVLGVSESRVSQLHSQCAARLRGRL 240