Pairwise Alignments

Query, 240 a.a., RNA polymerase sigma factor FliA from Dickeya dianthicola ME23

Subject, 246 a.a., RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons from Pseudomonas putida KT2440

 Score =  207 bits (528), Expect = 1e-58
 Identities = 117/240 (48%), Positives = 153/240 (63%), Gaps = 12/240 (5%)

Query: 3   ELYTAEGTMDKNSLWKRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLSAVERYDSL 62
           ++Y+      +  L +RY PLV+  A  L  RLPA+V+++DL+QAG IGLL    +YD+ 
Sbjct: 7   KMYSRAAKDAQYELIERYAPLVKRIAYHLLARLPANVQVEDLIQAGMIGLLEVANKYDAS 66

Query: 63  QGTAFTTYAVQRIRGAMLDELRSRDWAPRSVRRNAREVAQAMQQAEQSLGRAPTEQEVAQ 122
           +G +F TYA  RIRGAMLDE+R  DWAPRSV RN R V+ AM+  E   GR   + EVA 
Sbjct: 67  KGASFETYAGIRIRGAMLDEVRKGDWAPRSVHRNTRMVSDAMRAVEARTGRDAKDHEVAA 126

Query: 123 TLNISLEEYRQILLDTNNSQLFSYDEWREE------HGDSAEALLEGNEEANPLNQLMDV 176
            L +SL++Y  IL DT  S+LFS+D+  ++      H D A   +E      P   L + 
Sbjct: 127 ELQLSLDDYYGILNDTLGSRLFSFDDLLQDGEHEGLHEDGASGQVE------PARGLEEE 180

Query: 177 NLRQRVMDAIDNLPEREKMVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRAKL 236
             +  + +AI NLPERE++VL LYY EELNLKEIG VL V ESRVSQLHSQ   RLR++L
Sbjct: 181 RFQAALTEAIANLPERERLVLALYYDEELNLKEIGEVLGVSESRVSQLHSQCAARLRSRL 240