Pairwise Alignments

Query, 240 a.a., RNA polymerase sigma factor FliA from Dickeya dianthicola ME23

Subject, 241 a.a., RNA polymerase sigma factor for flagellar operon from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  138 bits (347), Expect = 1e-37
 Identities = 85/240 (35%), Positives = 137/240 (57%), Gaps = 11/240 (4%)

Query: 1   MSELYTAE-GTMDKNSLWKRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLSAVERY 59
           M+ +  AE G  D+      + PLVR    +L  ++  +++ DD++Q G +GLL A+ RY
Sbjct: 12  MASVAAAELGAADEQRHLLAFTPLVRRTVRQLSSQVGGAMDRDDMMQIGLMGLLEALRRY 71

Query: 60  DSLQGTAFTTYAVQRIRGAMLDELRSRDWAPRSVRRNAREVAQAMQQAEQSLGRAPTEQE 119
                  F  +A  R+RGA+LDELR +DW PRSVR+ +  +   ++   + LGR PTE E
Sbjct: 72  GE-PDERFPAFAGLRVRGAILDELRRQDWRPRSVRQESFRLKAEVRALTKRLGREPTEAE 130

Query: 120 VAQTLNISLEEYRQILLDTNNSQLFSYDEWREEHGDSAEALLEGNEEANPLNQLMDVNLR 179
           V   L+IS E Y     D+N   L S+D       D  + L   NE ++  +   ++ L+
Sbjct: 131 VLAELDISPEAYLAYQQDSNAETLASFD-------DLFDTL--SNEASSQRSPEAELVLK 181

Query: 180 QRVMDAIDNLPEREKMVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRAKLMSD 239
           + +  A+  L ERE+ V+ LYY+ EL+LKEI AVL + E+R+ Q++  A+++++  L +D
Sbjct: 182 RSLQQALGTLSEREQRVIQLYYEYELSLKEIAAVLGLTEARICQINKAALQKMKTVLQTD 241