Pairwise Alignments

Query, 240 a.a., RNA polymerase sigma factor FliA from Dickeya dianthicola ME23

Subject, 238 a.a., RNA polymerase sigma factor for flagellar operon from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  204 bits (519), Expect = 1e-57
 Identities = 106/236 (44%), Positives = 158/236 (66%), Gaps = 4/236 (1%)

Query: 4   LYTAEGTMDKNSLWKRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLSAVERYDSLQ 63
           +YTA+GT++++   ++Y PLVR  A  +  +LP SVELDDL+Q G IGL  A+ R++  Q
Sbjct: 1   MYTAKGTLNRDDQLRKYSPLVRRLAHHMIAKLPPSVELDDLIQVGMIGLTEAIARFEPTQ 60

Query: 64  GTAFTTYAVQRIRGAMLDELRSRDWAPRSVRRNAREVAQAMQQAEQSLGRAPTEQEVAQT 123
           G  F T+A QRIRGAM+DELR  DW  R  R++ +++ QA+ + +Q L R P E E+A+ 
Sbjct: 61  GVQFETFASQRIRGAMIDELREGDWMSRGSRKSQKDIEQAVHRLQQKLHRVPRESEIAEE 120

Query: 124 LNISLEEYRQILLDTNNSQLFSYDEWREEHGDSAEALLE---GNEEANPLNQLMDVNLRQ 180
           + +SL +Y+ +L     +QL  Y E    +GD  ++ L+   G+ EA+P   L D  +R 
Sbjct: 121 MGMSLADYQHLLAKVRGTQLV-YLEDISGNGDEDDSFLDRHMGDHEADPSAVLQDHRMRT 179

Query: 181 RVMDAIDNLPEREKMVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRAKL 236
            ++ AI  LPERE+ ++++YY+ ++NLKEI AVL V ESR+ QLHSQ+I RLR+KL
Sbjct: 180 ALVAAIKVLPEREQQIMSMYYEHDMNLKEIAAVLGVTESRICQLHSQSIARLRSKL 235