Pairwise Alignments

Query, 240 a.a., RNA polymerase sigma factor FliA from Dickeya dianthicola ME23

Subject, 239 a.a., RNA polymerase sigma factor for flagellar operon from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  384 bits (985), Expect = e-111
 Identities = 194/236 (82%), Positives = 216/236 (91%)

Query: 1   MSELYTAEGTMDKNSLWKRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLSAVERYD 60
           ++ LYTAEG MDK+SLW+RYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLL+AV+RYD
Sbjct: 1   VNSLYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVDRYD 60

Query: 61  SLQGTAFTTYAVQRIRGAMLDELRSRDWAPRSVRRNAREVAQAMQQAEQSLGRAPTEQEV 120
           +LQGTAFTTYAVQRIRGAMLDELRSRDW PRSVRRNAREVAQAM Q EQ LGR  TE EV
Sbjct: 61  ALQGTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAMGQLEQELGRNATETEV 120

Query: 121 AQTLNISLEEYRQILLDTNNSQLFSYDEWREEHGDSAEALLEGNEEANPLNQLMDVNLRQ 180
           A+ L I + EYRQ+LLDTNNSQLFSYDEWREEHGDS E + E +++ NPL+QL++ +LRQ
Sbjct: 121 AERLGIPVAEYRQMLLDTNNSQLFSYDEWREEHGDSIELVTEEHQQENPLHQLLEGDLRQ 180

Query: 181 RVMDAIDNLPEREKMVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRAKL 236
           RVMDAI++LPERE++VLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLR KL
Sbjct: 181 RVMDAIESLPEREQLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKL 236