Pairwise Alignments

Query, 240 a.a., RNA polymerase sigma factor FliA from Dickeya dianthicola ME23

Subject, 331 a.a., RNA polymerase sigma factor RpoS from Erwinia tracheiphila SCR3

 Score = 64.3 bits (155), Expect = 3e-15
 Identities = 56/226 (24%), Positives = 114/226 (50%), Gaps = 20/226 (8%)

Query: 29  LRLQVRLPA-----SVELDDLLQAGGIGLLSAVERYDSLQGTAFTTYAV----QRIRGAM 79
           LRL V++        + L DL++ G +GL+ AVE++D  +G  F+TYA     Q I  A+
Sbjct: 99  LRLVVKIARRYSNRGLALLDLIEEGNLGLIRAVEKFDPEKGFRFSTYATWWIRQTIERAI 158

Query: 80  LDELRSRDWAPRSVRRNAREVAQAMQQAEQSLGRAPTEQEVAQTLNISLEEYRQILLDTN 139
           +++ R+    P  + +      +  ++    L   P+ +E+A+ L+  +++  ++L    
Sbjct: 159 MNQTRTIR-LPIHIVKELNVYLRTARELAHKLDHEPSAEEIAEQLDKPVDDVSRML--RL 215

Query: 140 NSQLFSYDEWREEHGDSAEALLE---GNEEANPLNQLMDVNLRQRVMDAIDNLPEREKMV 196
           N ++ S D      GDS +ALL+     ++  P +   D +++Q ++  +  L  +++ V
Sbjct: 216 NERITSVDT-TLLGGDSDKALLDILADEKDNGPEDCTQDDDMKQSIVKWLFELNAKQREV 274

Query: 197 LT----LYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRAKLMS 238
           L     L   E   L+++G+ + +   RV Q+  + ++RLR  L +
Sbjct: 275 LARRFGLLGYEAATLEDVGSEIGLTRERVRQIQVEGLRRLREILQA 320