Pairwise Alignments

Query, 1149 a.a., transcription-repair coupling factor from Dickeya dianthicola ME23

Subject, 1149 a.a., transcription-repair coupling factor from Pseudomonas simiae WCS417

 Score = 1238 bits (3204), Expect = 0.0
 Identities = 631/1143 (55%), Positives = 827/1143 (72%), Gaps = 16/1143 (1%)

Query: 9    LPGKAGEQRLLGQLTGAACAVECAEIVERHAGLVVLITPDMQNALRLRDEIQQFTAQ-PV 67
            LP  AG+Q   G L GAA ++  AE         +L+T D Q+A RL  E+  F    PV
Sbjct: 9    LPAAAGKQHW-GNLPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELSFFAPDLPV 67

Query: 68   MTLPDWETLPYDSFSPHQEIISARLSTLYQLPSLTRGVLILPVNTLMQKVCPHAFLHGHA 127
            +  PDWETLPYD FSPHQ+IIS R+++LY+LP L  GVL++P+ T + ++ P  FL G +
Sbjct: 68   LHFPDWETLPYDLFSPHQDIISQRIASLYRLPELAHGVLVVPITTALHRLAPTKFLLGSS 127

Query: 128  LMLKKGQRLSRDRLRNQLEQAGYRSVDQVMEHGEFATRGALLDLFPMGSEEPFRIDFFDD 187
            L+L  GQ+L  +++R +LE +GYR VD V EHGEFA RGAL+DLFPMGS+ P+RID FDD
Sbjct: 128  LVLDIGQKLDVEQMRTRLEASGYRCVDTVYEHGEFAVRGALIDLFPMGSKLPYRIDLFDD 187

Query: 188  EIDSLRLFDADTQRTLNEVEQIHLLPAREFPTDKTAIELFRSQWREQFEVRRDAEHVYQQ 247
            EI++LR FD + QR++++V+ + LLPAREFP  K A+  F++++RE+F+V      ++Q 
Sbjct: 188  EIETLRTFDPENQRSIDKVDSVKLLPAREFPLQKDAVTRFKARFRERFDVDFRRCPIFQD 247

Query: 248  VSKGTLPAGIEYWQSLFFNQPLPALFSYLPTGTLLVNTGDIQQGADRFWQDIQQRHDSRR 307
            +S G  PAGIEY+  LFF++    LF YLP  T + +   I+Q A+ FW D++ R++ RR
Sbjct: 248  LSSGITPAGIEYYLPLFFDET-STLFDYLPQDTQVFSLPGIEQAAENFWNDVRNRYEERR 306

Query: 308  VDPMRPLLPPNALWLPVDTLFAELKQWPRVQLRSDTLPDKAANINLGYQPLPDLAVQHQN 367
            VDP RPLLPP  L+LPV+  FA LK WPRV      +   A         LPDLA+Q + 
Sbjct: 307  VDPSRPLLPPAELFLPVEDCFARLKSWPRVVASQQDVETGAGRERFPAATLPDLAIQAKA 366

Query: 368  KSPLDALRRFVEQFGGQIVFSVESEGRRETLQEVLSRIKLSPAPV-------KSLEQTAS 420
              PL+AL  F+  F G+++F+ ES GRRE L E+L R+KL P  V       KS E+ A 
Sbjct: 367  TQPLEALSNFLGDFPGRVLFTAESAGRREVLLELLERLKLRPKTVDSWPDFVKSKERLA- 425

Query: 421  PGCYLMIGASEHGFIDTLRQRTLICESDLLGERV-SRRRQDSRRTINTDTLIRNLAELRP 479
                + I   + G +       LI ES L G+RV  RRR++ R   N D +I+NL ELR 
Sbjct: 426  ----ITIAPLDEGLLLDDPALALIAESPLFGQRVMQRRRREKRADANNDAVIKNLTELRE 481

Query: 480  GQPVVHLEHGVGRYAGLTTLEAGGIKAEYLILHYAGEDKLYVPVSSLHLISRYAGGAEES 539
            G PVVH++HGVGRY GL TLE     AE+L + YA   KLYVPV++LHLI+RY G  +  
Sbjct: 482  GAPVVHIDHGVGRYLGLQTLEIDNQAAEFLTMEYAEGAKLYVPVANLHLIARYTGSDDAL 541

Query: 540  APLHKLGGDAWVRARQKAAEKVRDVAAELLDVYAQRAAHTGFAFKHDREQYQLFCQGFPF 599
            APLH+LG + W +A++KAAE+VRDVAAELLD+YA+RAA  G+AF   +  Y  F  GF F
Sbjct: 542  APLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFADPKADYATFSAGFAF 601

Query: 600  DTTPDQAQAINAVLSDMCRPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTT 659
            + TPDQ   I AV +DM  P  MDRLVCGDVGFGKTEVAMRAAF+AV   KQVA+LVPTT
Sbjct: 602  EETPDQQTTIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGKQVAILVPTT 661

Query: 660  LLAQQHFDNFRDRFANWPVRIEMLSRFRSQKEQTQVLEQTQEGKVDILIGTHKLLQSDVY 719
            LLAQQH+++FRDRFA+WPV +E++SRF+S KE    +    EGK+DI+IGTHKLL  DV 
Sbjct: 662  LLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVNAAIADLAEGKIDIVIGTHKLLSDDVK 721

Query: 720  WLDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGIRDLSIIATP 779
              +LGL+I+DEEHRFGVR KE++KA+R+ VDILTLTATPIPRTLNMA+SG+RDLSIIATP
Sbjct: 722  IKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIATP 781

Query: 780  PARRLAVKTFVREYDSLVVREAILREILRGGQVYYLYNDVENIEKAAQQLNELVPEARIA 839
            PARRL+V+TFV E +   V+EA+LRE+LRGGQVYYL+NDV+ IEK A  L ELVPEARIA
Sbjct: 782  PARRLSVRTFVMEQNKSTVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEARIA 841

Query: 840  IGHGQMRERDLERVMNDFHHQRFNVLVCTTIIETGIDIPSANTIIIERADHFGLAQLHQL 899
            IGHGQMRER+LE+VM+DF+H+RFNVL+ +TIIETGID+PSANTIIIERAD FGLAQLHQL
Sbjct: 842  IGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLHQL 901

Query: 900  RGRVGRSHHQAYAYLLTPNPKAMSNDAHKRLEAIASLEDLGAGFALATHDLEIRGAGELL 959
            RGRVGRSHHQAYAYLLTP  + +++DA KRLEAIA+ +DLGAGF LAT+DLEIRGAGELL
Sbjct: 902  RGRVGRSHHQAYAYLLTPPRQQITSDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGELL 961

Query: 960  GEGQSGQMESVGFSLYMDLLESAVESLKAGREPSLEDLISGQTDVELRLPALLPDDFIPD 1019
            G+GQSGQ+++VGF+LYM++LE AV++++ G +P+L+  + G  ++ LRLPAL+P++++PD
Sbjct: 962  GDGQSGQIQAVGFTLYMEMLERAVKAIRKGEQPNLDQPLGGGPEINLRLPALIPEEYLPD 1021

Query: 1020 VNTRLSFYKRIASAKNDNELDDLKAELIDRFGKLPDAARHLLQVAGLRQQAQTLGIKRIE 1079
            V+ RL  YKRIASA ++  L DL+ E+IDRFG LP+  ++L+++  L+ QA+ LGIK+++
Sbjct: 1022 VHARLILYKRIASATDEEGLKDLQVEMIDRFGLLPEPTKNLVRLTLLKLQAEQLGIKKVD 1081

Query: 1080 GNDKGGFVEFSQHNRVDPTHLIGLLQRDPKIYRLDGPSRLKFIKDLGGYPQRLTFITTLL 1139
               +GG +EF     VDP  LI L+Q  P  Y+ +G +  KF+  +    +R   +  L 
Sbjct: 1082 AGPQGGRIEFEAQTPVDPLVLIKLIQGQPNRYKFEGATLFKFMVPMERAEERFNTLEALF 1141

Query: 1140 EEM 1142
            E +
Sbjct: 1142 ERL 1144