Pairwise Alignments

Query, 1149 a.a., transcription-repair coupling factor from Dickeya dianthicola ME23

Subject, 1160 a.a., Transcription-repair coupling factor from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score = 1013 bits (2619), Expect = 0.0
 Identities = 554/1156 (47%), Positives = 747/1156 (64%), Gaps = 37/1156 (3%)

Query: 14   GEQRLLGQLTGAACAVECAEIVERHAG---LVVLITPDMQNALRLRDEIQQFTAQPVMTL 70
            G++  +    G+A A+  A++  R      L  ++T D  +A RL DE+  F       L
Sbjct: 9    GKRHTVPHPGGSADALMLAQLGAREKAEGRLTAIVTADANDAQRLIDEMAFFAPGLRCAL 68

Query: 71   -PDWETLPYDSFSPHQEIISARLSTLYQLPSLTRG----VLILPVNTLMQKVCPHAFLHG 125
             PDWETLPYD+FSPHQ++IS RL+TL+++    +     V+++P  T + ++ P +FL G
Sbjct: 69   FPDWETLPYDTFSPHQDLISERLATLWRISQRDKDTGADVVLIPATTALYRLAPPSFLAG 128

Query: 126  HALMLKKGQRLSRDRLRNQLEQAGYRSVDQVMEHGEFATRGALLDLFPMGSEEPFRIDFF 185
            +    K  Q+L   RL+ QL  AGY+ V QV+  GE+A RG L+DLFPMGS  P+R+D F
Sbjct: 129  YTFHFKVKQKLDEARLKGQLTLAGYQHVTQVVSPGEYAVRGGLIDLFPMGSLVPYRVDLF 188

Query: 186  DDEIDSLRLFDADTQRTLNEVEQIHLLPAREFPTDKTAIELFRSQWREQFEVRRDAEHVY 245
            DDEIDS+R FD D+QR+L  V ++ LLP REFP D  A   FRS+WRE  E       +Y
Sbjct: 189  DDEIDSIRTFDPDSQRSLYPVNEVRLLPGREFPMDDAARAKFRSRWRELLEGDPTKSRIY 248

Query: 246  QQVSKGTLPAGIEYWQSLFFNQPLPALFSYLPTGTLLVNTGDIQQGADRFWQDIQQRHDS 305
            + +  G   AGIEY+  LFF+     +F YL T   +V  GD++    RFWQD + RH  
Sbjct: 249  KDIGNGVATAGIEYYLPLFFDDTA-TVFDYLGTDATVVLHGDLEPAFQRFWQDTKDRHRL 307

Query: 306  RRVDPMRPLLPPNALWLPVDTLFAELKQWPRVQLRSDTLP-DKAANINLGYQPLPDLAVQ 364
             R D  RP+LPP AL+L  +  +    +  +  +R      +  A++    Q L DL+V 
Sbjct: 308  LRGDAERPVLPPEALFLATEQFYTRANEHAQYVVRPAQQDIEHGAHV----QKLGDLSVV 363

Query: 365  HQNKSPLDALRRFVEQFGGQIVFSVESEGRRETLQEVLSRIKLSPAPVKSL-------EQ 417
               + PL  L+  +     +++   ES+GRRE+L + L    + P    SL       E+
Sbjct: 364  RGAEDPLARLQAHIRNTAHRVLLLAESDGRRESLLDFLRASGVHPPAFDSLAEFQASDEK 423

Query: 418  TASPGCYLMIGAS--EHGFIDTLRQRTLICESDLLGERVSRRRQDSRRTINTDTLIRNLA 475
            T      L +G S  + G ID + +  L           +RRR+   +  + D LI++L+
Sbjct: 424  TGIATAALAVGFSWLDDG-IDFVTETELFAAGP-----TTRRRRKQEQVSDVDALIKDLS 477

Query: 476  ELRPGQPVVHLEHGVGRYAGLTTLEAG-----GIKA--EYLILHYAGEDKLYVPVSSLHL 528
            EL  G PVVH  HG+GRY GL  ++ G     G  A  E+L L YA +  LYVPVS L L
Sbjct: 478  ELNVGDPVVHNAHGIGRYRGLVNMDMGEKNPDGSPALQEFLHLEYADKAVLYVPVSQLQL 537

Query: 529  ISRYAGGAEESAPLHKLGGDAWVRARQKAAEKVRDVAAELLDVYAQRAAHTGFAFKHDRE 588
            I RY G + + APLHKLG   W +A++KAAE+VRD AAELL++YA+RAA  G AF++  +
Sbjct: 538  IGRYTGVSADEAPLHKLGSGQWDKAKRKAAEQVRDAAAELLNIYARRAARQGHAFRYSAQ 597

Query: 589  QYQLFCQGFPFDTTPDQAQAINAVLSDMCRPLAMDRLVCGDVGFGKTEVAMRAAFLAVEN 648
             Y++F   F F+ T DQ  AI+AV+ DM  P  MDRLVCGDVGFGKTEVA+RAAF+AV  
Sbjct: 598  DYEVFANDFGFEETADQRGAIHAVIQDMISPRPMDRLVCGDVGFGKTEVALRAAFVAVTG 657

Query: 649  HKQVAVLVPTTLLAQQHFDNFRDRFANWPVRIEMLSRFRSQKEQTQVLEQTQEGKVDILI 708
             +QVA L PTTLLA+QHF    DRF+ WPV++  +SRFRS KE T   +   +G VDI++
Sbjct: 658  GRQVAFLAPTTLLAEQHFQTLSDRFSKWPVKVAEMSRFRSAKEITAAAKGLADGSVDIVV 717

Query: 709  GTHKLLQSDVYWLDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMS 768
            GTHKLL   V + DLGLLI+DEEHRFGVRHKE +KA+RA VD+LTLTATPIPRTL MA+ 
Sbjct: 718  GTHKLLSESVKFKDLGLLIIDEEHRFGVRHKEAMKALRAEVDVLTLTATPIPRTLGMALE 777

Query: 769  GIRDLSIIATPPARRLAVKTFVREYDSLVVREAILREILRGGQVYYLYNDVENIEKAAQQ 828
            G+RDLS+IAT P RRLA+KTFVR   + V+REA+LRE+ RGGQVY+L+N+VE IE   Q+
Sbjct: 778  GLRDLSVIATAPQRRLAIKTFVRNEGNGVIREAVLRELKRGGQVYFLHNEVETIENRRQK 837

Query: 829  LNELVPEARIAIGHGQMRERDLERVMNDFHHQRFNVLVCTTIIETGIDIPSANTIIIERA 888
            L E++PEARIAI HGQM ER+LERVM DF  QRFNVL+C+TIIETGID+P+ANTI++ RA
Sbjct: 838  LEEILPEARIAIAHGQMPERELERVMRDFVAQRFNVLLCSTIIETGIDVPTANTIVMSRA 897

Query: 889  DHFGLAQLHQLRGRVGRSHHQAYAYLLTPNPKAMSNDAHKRLEAIASLEDLGAGFALATH 948
            D FGLAQLHQLRGRVGRSHHQAYAYL+ P+ + ++  A +RL+AI  +E+LG+GF LA H
Sbjct: 898  DKFGLAQLHQLRGRVGRSHHQAYAYLMVPDIEGLTKHAAQRLDAIQQMEELGSGFYLAMH 957

Query: 949  DLEIRGAGELLGEGQSGQMESVGFSLYMDLLESAVESLKAGREPSLEDLISGQTDVELRL 1008
            DLEIRGAGE+LGE QSG M  VGF LY ++L  AV SLKAGREP L   +S  TD+ L  
Sbjct: 958  DLEIRGAGEVLGEHQSGNMLEVGFQLYNEMLSEAVSSLKAGREPDLLSPLSVTTDINLHA 1017

Query: 1009 PALLPDDFIPDVNTRLSFYKRIASAKNDNELDDLKAELIDRFGKLPDAARHLLQVAGLRQ 1068
            PALLP+D+  DV+ RLSFYK++A+AK+ +++D L  E++DRFGKLP  A+ L+ V  LR 
Sbjct: 1018 PALLPNDYCGDVHLRLSFYKKLATAKSTDQVDALLEEIVDRFGKLPPQAQTLIDVHRLRC 1077

Query: 1069 QAQTLGIKRIEGNDKGGFVEFSQHNRVDPTHLIGLLQRDPKIYRLDGPSRLKFIKDLGGY 1128
             +   G+ +++       + F  +   +P  +I L+Q++  I +L G  +L+  + L   
Sbjct: 1078 ISTPYGVVKVDAAPGVTNITFRANPPFEPMRIIELIQKNRHI-KLAGNDKLRIERPLPEV 1136

Query: 1129 PQRLTFITTLLEEMAQ 1144
              R+  +  +L  + Q
Sbjct: 1137 KDRVQLVRDVLRSLGQ 1152