Pairwise Alignments

Query, 1149 a.a., transcription-repair coupling factor from Dickeya dianthicola ME23

Subject, 1148 a.a., Transcription-repair coupling factor from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score = 1861 bits (4820), Expect = 0.0
 Identities = 924/1148 (80%), Positives = 1031/1148 (89%)

Query: 1    MPEQYRYTLPGKAGEQRLLGQLTGAACAVECAEIVERHAGLVVLITPDMQNALRLRDEIQ 60
            MPE+ RYTLP KAG+QR LG+LTGAACA   AEI ERHAG VVLI PDMQNALRL DEI+
Sbjct: 1    MPEKQRYTLPTKAGDQRQLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEIR 60

Query: 61   QFTAQPVMTLPDWETLPYDSFSPHQEIISARLSTLYQLPSLTRGVLILPVNTLMQKVCPH 120
            QFT Q VM L DWETLPYDSFSPHQEIIS+RLSTLYQLPS+ RGVLI+PVNTLMQ+VCPH
Sbjct: 61   QFTDQMVMNLADWETLPYDSFSPHQEIISSRLSTLYQLPSMQRGVLIVPVNTLMQRVCPH 120

Query: 121  AFLHGHALMLKKGQRLSRDRLRNQLEQAGYRSVDQVMEHGEFATRGALLDLFPMGSEEPF 180
            ++LHGHAL++KKGQRLSRD LR QL+ AGYR VDQVMEHGE+ATRGALLDLFPMGSE+P+
Sbjct: 121  SYLHGHALVMKKGQRLSRDALRAQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSEQPY 180

Query: 181  RIDFFDDEIDSLRLFDADTQRTLNEVEQIHLLPAREFPTDKTAIELFRSQWREQFEVRRD 240
            R+DFFDDEIDSLRLFDADTQRTL EVE I+LLPA EFPTDK AIELFRSQWR+ FEV+RD
Sbjct: 181  RLDFFDDEIDSLRLFDADTQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRD 240

Query: 241  AEHVYQQVSKGTLPAGIEYWQSLFFNQPLPALFSYLPTGTLLVNTGDIQQGADRFWQDIQ 300
            AEH+YQQVSKGTLPAGIEYWQ LFF++PLP LFSY P  TL+VNTG ++  A+RF  D  
Sbjct: 241  AEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLVVNTGSLETSAERFQADTL 300

Query: 301  QRHDSRRVDPMRPLLPPNALWLPVDTLFAELKQWPRVQLRSDTLPDKAANINLGYQPLPD 360
             R ++R VDPMRPLLPP ALWL VD LF+ELK+WPR+QL++D LP+KAAN NLG+Q LPD
Sbjct: 301  ARFENRGVDPMRPLLPPEALWLRVDELFSELKRWPRLQLKTDHLPEKAANTNLGFQKLPD 360

Query: 361  LAVQHQNKSPLDALRRFVEQFGGQIVFSVESEGRRETLQEVLSRIKLSPAPVKSLEQTAS 420
            LA+Q Q K+PLDALR+F+E F G ++FSVESEGRRE L E+L+RIK++P  +  L++   
Sbjct: 361  LAIQAQQKAPLDALRKFLESFSGPVIFSVESEGRREALGELLARIKIAPKRILRLDEAQD 420

Query: 421  PGCYLMIGASEHGFIDTLRQRTLICESDLLGERVSRRRQDSRRTINTDTLIRNLAELRPG 480
             G YLMIGA+EHGFIDT R   LICESDLLGERV+RRR DSRRTIN DTLIRNLAEL  G
Sbjct: 421  AGRYLMIGAAEHGFIDTQRNLALICESDLLGERVARRRLDSRRTINPDTLIRNLAELHVG 480

Query: 481  QPVVHLEHGVGRYAGLTTLEAGGIKAEYLILHYAGEDKLYVPVSSLHLISRYAGGAEESA 540
            QPVVHLEHGVGRYAG+TTLEAGGIK EYL+L YA + KLYVPVSSLHLISRYAGGAEESA
Sbjct: 481  QPVVHLEHGVGRYAGMTTLEAGGIKGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEESA 540

Query: 541  PLHKLGGDAWVRARQKAAEKVRDVAAELLDVYAQRAAHTGFAFKHDREQYQLFCQGFPFD 600
            PLHKLGGDAW RARQKAAEKVRDVAAELLD+YAQRAA  GFAFKHDREQYQLFC  FPF+
Sbjct: 541  PLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFE 600

Query: 601  TTPDQAQAINAVLSDMCRPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTL 660
            TTPDQAQAINAVLSDMC+PLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTL
Sbjct: 601  TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTL 660

Query: 661  LAQQHFDNFRDRFANWPVRIEMLSRFRSQKEQTQVLEQTQEGKVDILIGTHKLLQSDVYW 720
            LAQQH+DNFRDRFANWPVRIEMLSRFRS KEQTQ+L +  EGK+DILIGTHKLLQSDV  
Sbjct: 661  LAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKL 720

Query: 721  LDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGIRDLSIIATPP 780
             DLGLLIVDEEHRFGVRHKERIKAMRA+VDILTLTATPIPRTLNMAMSG+RDLSIIATPP
Sbjct: 721  RDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPP 780

Query: 781  ARRLAVKTFVREYDSLVVREAILREILRGGQVYYLYNDVENIEKAAQQLNELVPEARIAI 840
            ARRLAVKTFVREYDSLVVREAILREILRGGQVYYLYNDVENI+KAA++L ELVPEARIAI
Sbjct: 781  ARRLAVKTFVREYDSLVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAI 840

Query: 841  GHGQMRERDLERVMNDFHHQRFNVLVCTTIIETGIDIPSANTIIIERADHFGLAQLHQLR 900
            GHGQMRER+LERVMNDFHHQRFNVLVCTTIIETGIDIP+ANTIIIERADHFGLAQLHQLR
Sbjct: 841  GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR 900

Query: 901  GRVGRSHHQAYAYLLTPNPKAMSNDAHKRLEAIASLEDLGAGFALATHDLEIRGAGELLG 960
            GRVGRSHHQAYA+LLTP+PKAM+ DA KRLEAIASLEDLGAGFALATHDLEIRGAGELLG
Sbjct: 901  GRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG 960

Query: 961  EGQSGQMESVGFSLYMDLLESAVESLKAGREPSLEDLISGQTDVELRLPALLPDDFIPDV 1020
            E QSG ME++GFSLYM+LLE+AV++LKAGREPSLEDL S QT+VELR+P+LLPDDFIPDV
Sbjct: 961  EEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDV 1020

Query: 1021 NTRLSFYKRIASAKNDNELDDLKAELIDRFGKLPDAARHLLQVAGLRQQAQTLGIKRIEG 1080
            NTRLSFYKRIASAKN+NEL+++K ELIDRFG LPD AR+LL +A LRQQAQ LGI+++EG
Sbjct: 1021 NTRLSFYKRIASAKNENELEEIKVELIDRFGLLPDPARNLLDIARLRQQAQKLGIRKLEG 1080

Query: 1081 NDKGGFVEFSQHNRVDPTHLIGLLQRDPKIYRLDGPSRLKFIKDLGGYPQRLTFITTLLE 1140
            N+KGG +EF++ N VDP  LIGLLQ+ P+ +RLDGP+RLKFI+DL     R+ ++   ++
Sbjct: 1081 NEKGGTIEFAEKNHVDPAWLIGLLQKQPQHFRLDGPTRLKFIQDLSERKTRIDWVRQFMQ 1140

Query: 1141 EMAQHTCA 1148
            ++ ++  A
Sbjct: 1141 QLEENAIA 1148