Pairwise Alignments

Query, 1149 a.a., transcription-repair coupling factor from Dickeya dianthicola ME23

Subject, 1116 a.a., transcription-repair coupling factor (mfd) from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  537 bits (1384), Expect = e-156
 Identities = 289/702 (41%), Positives = 429/702 (61%), Gaps = 31/702 (4%)

Query: 390  ESEGRRETLQEVLSRI----KLSPAPVKSLEQTASPGCYLMIGASEHGFIDTLRQRTLIC 445
            ESE + E LQ +   +    K+   PV   E                GF+D      + C
Sbjct: 363  ESEKQVERLQNIFQELDPTLKIQSLPVSIRE----------------GFVD--HSTMIAC 404

Query: 446  ESD-LLGERVSRRRQDSRRTINTDTLIRNLAELRPGQPVVHLEHGVGRYAGLTTLEAGGI 504
             +D  + ER  R +   + +      ++ L  L+ G  VVH+++GVGR+AGL  +E    
Sbjct: 405  YTDHQIFERYHRYKSHKKASKTKALTLKELKTLQAGDYVVHVDYGVGRFAGLEKVEVNDN 464

Query: 505  KAEYLILHYAGEDKLYVPVSSLHLISRYAGGAEESAPLHKLGGDAWVRARQKAAEKVRDV 564
              E + L +  +D LYV + SLH IS+Y+G       + KLG   W   ++K   KV+D+
Sbjct: 465  FQEAVRLIFRDDDLLYVNIHSLHKISKYSGQEGTLPTMSKLGSPEWENKKKKVKRKVKDI 524

Query: 565  AAELLDVYAQRAAHTGFAFKHDREQYQLFCQGFPFDTTPDQAQAINAVLSDMCRPLAMDR 624
            A +L+ +YA+R   +G  +  D          F F+ TPDQA A   V +DM +P  MDR
Sbjct: 525  AKDLIALYAKRRNASGHQYAPDSVLQVELESSFIFEDTPDQAVATGDVKADMEKPYPMDR 584

Query: 625  LVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHFDNFRDRFANWPVRIEMLS 684
            LVCGDVGFGKTEVA+RAAF A+ + KQVAVLVPTT+LA QH+  F++R   +PV+++ ++
Sbjct: 585  LVCGDVGFGKTEVAIRAAFKAINDRKQVAVLVPTTILAMQHYRTFKERLEGFPVKVDYIN 644

Query: 685  RFRSQKEQTQVLEQTQEGKVDILIGTHKLLQSDVYWLDLGLLIVDEEHRFGVRHKERIKA 744
            RFR+ K+  ++ +Q   G++DIL+GTH+++  DV + DLGLLI+DEE +FGV+ K+++K 
Sbjct: 645  RFRTTKQVKEITKQVTSGEIDILVGTHRIVNKDVQFKDLGLLIIDEEQKFGVKVKDQLKE 704

Query: 745  MRANVDILTLTATPIPRTLNMAMSGIRDLSIIATPPARRLAVKTFVREYDSLVVREAILR 804
            +R NVD+LTLTATPIPRTL+ ++ G RDLS+IATPP  R  V T +  ++  V+R+A+ R
Sbjct: 705  LRVNVDVLTLTATPIPRTLHFSLMGARDLSVIATPPPNRQPVTTEIHTFEEEVIRDAVSR 764

Query: 805  EILRGGQVYYLYNDVENIEKAAQQLNELVPEARIAIGHGQMRERDLERVMNDFHHQRFNV 864
            E+ RGGQV++++N V  I+  A  +  LVP+A+IA  HGQM  + LE++M  F    F+V
Sbjct: 765  ELQRGGQVFFVHNRVGEIDSIANLIMRLVPDAKIAGAHGQMDGKQLEKIMVKFIEGEFDV 824

Query: 865  LVCTTIIETGIDIPSANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAYLLTPNPKAMSN 924
            LV T IIE+G+DIP+ANTIII RA  FGL+ LHQ+RGRVGRS+ +AY YLLT     ++ 
Sbjct: 825  LVSTNIIESGLDIPNANTIIINRAHMFGLSDLHQMRGRVGRSNKKAYCYLLTSPMSGLTA 884

Query: 925  DAHKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEGQSGQMESVGFSLYMDLLESAVE 984
            +A KRL+ +    DLG GF +A  DL+IRGAG LLG  QSG +  +GF +Y  +L+ AV+
Sbjct: 885  EARKRLQTLEEFSDLGDGFKVAMRDLDIRGAGNLLGAEQSGFITDLGFEMYHKILDEAVQ 944

Query: 985  SLKAGREPSLED--------LISGQTDVELRLPALLPDDFIPDVNTRLSFYKRIASAKND 1036
             LK     SL +        ++     +E  +  L+P+D++ +++ RL+ Y ++ + K +
Sbjct: 945  ELKENEFASLFEVDLKEKVKVLVQDCVIETDMELLIPEDYVSNISERLNLYSKLDNIKTE 1004

Query: 1037 NELDDLKAELIDRFGKLPDAARHLLQVAGLRQQAQTLGIKRI 1078
              L      + DRFG +P     L++   LR  A+ LG +++
Sbjct: 1005 EALTKFAHAVSDRFGPIPPVVEDLMETVRLRWLAEGLGFEKL 1046



 Score = 66.2 bits (160), Expect = 1e-14
 Identities = 50/213 (23%), Positives = 94/213 (44%), Gaps = 11/213 (5%)

Query: 8   TLPGKAGEQRLLGQLTGAACAVECAEIVERHAGLVVLITPDMQNALRLRDEIQQFTAQPV 67
           T+    G       ++G+   V  A  +       ++I  D + A  L  ++     +  
Sbjct: 22  TIQSSVGSNFAFKGISGSMDMVLLATFINLRHSSHLIIAHDKEEAAYLASDLSSLLDRVT 81

Query: 68  MTL-PDWETLPYDSFSPHQEIISARLSTLYQ-----LPSLTRGVLILPV-NTLMQKVCPH 120
             + P     PY     H+E+ +A +    +     L S T+  +I+     L +KV   
Sbjct: 82  PHIFPSSYKRPYQ----HEEVDNANVLMRAEILNKVLSSDTKMEIIVSYPEALYEKVINK 137

Query: 121 AFLHGHALMLKKGQRLSRDRLRNQLEQAGYRSVDQVMEHGEFATRGALLDLFPMGSEEPF 180
             L  +    K G+++  + +   L    +   D V E G+FA RG ++D+F   +E P+
Sbjct: 138 KSLQENTFTAKVGEKVDVEFITELLSTYDFEKTDFVYEPGQFAIRGGIIDVFSFANEYPY 197

Query: 181 RIDFFDDEIDSLRLFDADTQRTLNEVEQIHLLP 213
           RI+ F  EI+S+R FD ++Q +   ++ I ++P
Sbjct: 198 RIELFGKEIESIRTFDTESQLSEESLDHISIIP 230